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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274131 (6 seq.)
>WENV170620604
FUWD013035163
[FUWD] metagenome; unknown
560
483
-
Glu
TTC
[ENA]
¡û
>WENV170628107
FUWD013241928
[FUWD] metagenome; unknown
6148
6071
-
Glu
TTC
[ENA]
¡û
>SRA1023151
SRR035084.20887
454 Sequencing (SRP001805)
73
150
+
Glu
TTC
[SRA]
>SRA1045654
SRR035093.142155
454 Sequencing (SRP001814)
195
272
+
Glu
TTC
[SRA]
>SRA1047269
SRR035093.498425
454 Sequencing (SRP001814)
4
81
+
Glu
TTC
[SRA]
>SRA1047403
SRR035093.530955
454 Sequencing (SRP001814)
10
87
+
Glu
TTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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