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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274133 (10 seq.)
>WENV170616232
FUWD012882073
[FUWD] metagenome; unknown
412
489
+
Arg
TCT
[ENA]
¡û
>SRA1023294
SRR035084.65662
454 Sequencing (SRP001805)
408
331
-
Arg
TCT
[SRA]
>SRA1024564
SRR035084.348778
454 Sequencing (SRP001805)
156
233
+
Arg
TCT
[SRA]
>SRA1025198
SRR035084.512411
454 Sequencing (SRP001805)
135
58
-
Arg
TCT
[SRA]
>SRA1025367
SRR035084.566351
454 Sequencing (SRP001805)
218
141
-
Arg
TCT
[SRA]
>SRA1045084
SRR035092.407219
454 Sequencing (SRP001813)
267
190
-
Arg
TCT
[SRA]
>SRA1045584
SRR035093.129402
454 Sequencing (SRP001814)
215
292
+
Arg
TCT
[SRA]
>SRA1046847
SRR035093.397700
454 Sequencing (SRP001814)
231
308
+
Arg
TCT
[SRA]
>SRA1047076
SRR035093.450052
454 Sequencing (SRP001814)
231
308
+
Arg
TCT
[SRA]
>SRA1047571
SRR035093.583307
454 Sequencing (SRP001814)
140
63
-
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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