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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274327 (56 seq.)
>W1711750474
MUMZ01000065
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
103744
103669
-
Asn
GTT
[ENA]
¡û
>W131196532
ASTJ01000040
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
104846
104921
+
Asn
GTT
[ENA]
¡û
>W131196534
ASTJ01000041
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
102886
102961
+
Asn
GTT
[ENA]
¡û
>W131221024
AUAB01000023
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
73409
73484
+
Asn
GTT
[ENA]
¡û
>W131221031
AUAB01000046
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
5435
5510
+
Asn
GTT
[ENA]
¡û
>W141152713
AXCA01000027
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
357
282
-
Asn
GTT
[ENA]
¡û
>W141212672
AZQX01000094
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
25349
25424
+
Asn
GTT
[ENA]
¡û
>WENV170680039
LFCJ01002899
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
8044
8119
+
Asn
GTT
[ENA]
¡û
>WENV170683408
LFIK01011106
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6977
6902
-
Asn
GTT
[ENA]
¡û
>WENV170684684
LFRM01052469
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
640
565
-
Asn
GTT
[ENA]
¡û
>WENV170703778
LKMJ01016571
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3600
3525
-
Asn
GTT
[ENA]
¡û
>WENV170893253
MDTD01050003
[MDTD] marine metagenome; seawater
4175
4100
-
Asn
GTT
[ENA]
¡û
>WENV170940621
MDTG01346211
[MDTG] marine metagenome; seawater
469
544
+
Asn
GTT
[ENA]
¡û
>WENV170965739
MTEV01001652
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
11168
11093
-
Asn
GTT
[ENA]
¡û
>W141557609
JHVH01000006
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
46533
46608
+
Asn
GTT
[ENA]
¡û
>W141562131
JHYY01000027
Gammaproteobacteria
Halotalea alkalilenta DSM 17697 [JHYY]
30911
30986
+
Asn
GTT
[ENA]
¡û
>W1810062619
PDOG01000001
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
482835
482760
-
Asn
GTT
[ENA]
¡û
>W1810062713
PDOH01000039
Gammaproteobacteria
Halomonas heilongjiangensis 9-2 [PDOH]
220115
220040
-
Asn
GTT
[ENA]
¡û
>W1810177412
PJRN01000001
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
113571
113646
+
Asn
GTT
[ENA]
¡û
>W1810199977
PNRE01000104
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
84
159
+
Asn
GTT
[ENA]
¡û
>W1810199981
PNRF01000001
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
93636
93711
+
Asn
GTT
[ENA]
¡û
>W1810200068
PNRG01000027
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
8613
8688
+
Asn
GTT
[ENA]
¡û
>W1810423975
PYUD01000007
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
151256
151181
-
Asn
GTT
[ENA]
¡û
>W1810423976
PYUD01000007
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
151127
151052
-
Asn
GTT
[ENA]
¡û
>W1810608671
QGTM01000028
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
4005
3930
-
Asn
GTT
[ENA]
¡û
>W1810624162
QHGY01000008
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
27595
27520
-
Asn
GTT
[ENA]
¡û
>W1810760656
QPKI01000006
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
35363
35288
-
Asn
GTT
[ENA]
¡û
>W2010099441
BJUK01000011
Gammaproteobacteria
Halomonas pacifica NBRC 102220 [BJUK]
34796
34721
-
Asn
GTT
[ENA]
¡û
>W2010537940
JAAQTN010000020
Gammaproteobacteria
Halomonas desiderata FB2 [JAAQTN]
74922
74997
+
Asn
GTT
[ENA]
¡û
>W2010537986
JAAQTO010000008
Gammaproteobacteria
Halomonas sp. DX6 [JAAQTO]
44918
44843
-
Asn
GTT
[ENA]
¡û
>W2010681344
JACEFT010000006
Gammaproteobacteria
Halomonas kenyensis DSM 17331 [JACEFT]
186915
186840
-
Asn
GTT
[ENA]
¡û
>W2011532865
SBLD01000002
Gammaproteobacteria
Halomonas sp. TBZ202 [SBLD]
186386
186461
+
Asn
GTT
[ENA]
¡û
>W2011617430
SLTR01000002
Gammaproteobacteria
Halomonas sp. 204 [SLTR]
176275
176350
+
Asn
GTT
[ENA]
¡û
>W2012141861
VTPY01000001
Gammaproteobacteria
Halomonas sp. L5 [VTPY]
105835
105910
+
Asn
GTT
[ENA]
¡û
>W2012446477
WUTS01000001
Gammaproteobacteria
Halomonas sp. D1-1 [WUTS]
145656
145731
+
Asn
GTT
[ENA]
¡û
>W2110051391
BNAE01000007
Gammaproteobacteria
Halomonas urumqiensis CGMCC 1.12917 [BNAE]
7238
7313
+
Asn
GTT
[ENA]
¡û
>W2110051392
BNAE01000007
Gammaproteobacteria
Halomonas urumqiensis CGMCC 1.12917 [BNAE]
7367
7442
+
Asn
GTT
[ENA]
¡û
>W2110358951
JADNRL010000003
Gammaproteobacteria
Halomonas sp. KAO [JADNRL]
49631
49556
-
Asn
GTT
[ENA]
¡û
>W2110405912
JAEDAF010000007
Gammaproteobacteria
Halomonas pacifica CARE-V15 [JAEDAF]
118605
118530
-
Asn
GTT
[ENA]
¡û
>W2110659464
JAHXBV010000002
Gammaproteobacteria
Halomonas sp. ANAO-440 [JAHXBV]
131367
131442
+
Asn
GTT
[ENA]
¡û
>W2110663850
JAHYCA010000003
Gammaproteobacteria
Halomonas sp. Y3S6 [JAHYCA]
613923
613848
-
Asn
GTT
[ENA]
¡û
>C201059472
CP035042
Gammaproteobacteria
Halomonas sp. BC-M4-5 [CP035042]
3278244
3278169
-
Asn
GTT
-
¡û
>C211093654
CP053381
Gammaproteobacteria
Halomonas sp. MCCC 1A11059 [CP053381]
2933958
2933883
-
Asn
GTT
-
¡û
>C211093719
CP053382
Gammaproteobacteria
Halomonas sp. MCCC 1A13316 [CP053382]
2964260
2964185
-
Asn
GTT
-
¡û
>C211093780
CP053383
Gammaproteobacteria
Halomonas sp. MCCC 1A13718 [CP053383]
3053800
3053725
-
Asn
GTT
-
¡û
>C211206908
CP065435
Gammaproteobacteria
Halomonas campisalis SS10-MC5 [CP065435]
2973757
2973682
-
Asn
GTT
-
¡û
>C231426074
CP100360
Gammaproteobacteria
Halomonas sp. 3H [CP100360]
2596283
2596208
-
Asn
GTT
-
¡û
>C231426075
CP100360
Gammaproteobacteria
Halomonas sp. 3H [CP100360]
2596174
2596099
-
Asn
GTT
-
¡û
>C231507465
CP107009
Gammaproteobacteria
Halomonas sp. LR3S48 [CP107009]
3059319
3059244
-
Asn
GTT
-
¡û
>C241153815
CP053032
Gammaproteobacteria
Halomonas sp. PGE1 [CP053032]
2860464
2860389
-
Asn
GTT
-
¡û
>C241292953
CP130143
Gammaproteobacteria
Halomonas alkalicola M2 [CP130143]
2576166
2576091
-
Asn
GTT
-
¡û
>C241297782
CP131913
Gammaproteobacteria
Halomonas alkalicola CICC 11012s [CP131913]
3356325
3356400
+
Asn
GTT
-
¡û
>W2310018822
BRCY01000004
Gammaproteobacteria
Halomonas sp. NCCP-2165 [BRCY]
94229
94304
+
Asn
GTT
[ENA]
¡û
>C161068832
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
1284016
1284091
+
Asn
GTT
[Ensembl]
¡û
>C161085572
CP015243
Gammaproteobacteria
Halotalea alkalilenta IHB B 13600 [CP015243]
3499297
3499372
+
Asn
GTT
[Ensembl]
¡û
>W121123965
BAEU01000143
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
35765
35690
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK