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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274446 (51 seq.)
>A171001296
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
1629759
1629833
+
Lys
TTT
-
¡û
>A171003112
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1866261
1866187
-
Lys
TTT
-
¡û
>A171003166
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2536833
2536907
+
Lys
TTT
-
¡û
>A171003480
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
2398654
2398728
+
Lys
TTT
-
¡û
>A171006939
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
1279932
1279858
-
Lys
TTT
-
¡û
>A171006967
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2662864
2662938
+
Lys
TTT
-
¡û
>WENV170679710
LFCJ01000179
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
15042
14968
-
Lys
TTT
[ENA]
¢þ
>W1910226681
FMZP01000003
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
1233
1159
-
Lys
TTT
[ENA]
¡û
>W1910226933
FNFE01000007
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
292318
292391
+
Lys
TTT
[ENA]
¡û
>W1910227158
FNLC01000005
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
1029
955
-
Lys
TTT
[ENA]
¡û
>W1910229345
FNWL01000003
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
8129
8055
-
Lys
TTT
[ENA]
¡û
>W1910229817
FOFD01000004
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
679455
679529
+
Lys
TTT
[ENA]
¡û
>W1910229887
FOIC01000003
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
281366
281440
+
Lys
TTT
[ENA]
¡û
>W1910229944
FOIS01000003
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
866576
866650
+
Lys
TTT
[ENA]
¡û
>W1910230278
FOKW01000016
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
5739
5665
-
Lys
TTT
[ENA]
¡û
>W1910230425
FORO01000002
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
163117
163191
+
Lys
TTT
[ENA]
¡û
>W1910340524
FTNP01000014
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
3085
3159
+
Lys
TTT
[ENA]
¡û
>W1910572695
JNCS01000001
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
833654
833728
+
Lys
TTT
[ENA]
¡û
>W1910575896
JROF01000035
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
11939
11865
-
Lys
TTT
[ENA]
¡û
>W1910657558
MASN01000024
Euryarchaeota
Natrialba sp. SSL1 [MASN]
3205
3132
-
Lys
TTT
[ENA]
¡û
>W1910826099
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
1225517
1225591
+
Lys
TTT
[ENA]
¡û
>W1911433980
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2734955
2735029
+
Lys
TTT
[ENA]
¡û
>W1911591337
PKKI01000026
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
27185
27259
+
Lys
TTT
[ENA]
¡û
>W1911717978
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
1251065
1250991
-
Lys
TTT
[ENA]
¡û
>W1610001052
ACIT01000002
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
86587
86513
-
Lys
TTT
[ENA]
¡û
>W1610004034
AGFZ01000001
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
24758
24832
+
Lys
TTT
[ENA]
¡û
>W1610004082
AGIM01000003
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
43899
43825
-
Lys
TTT
[ENA]
¡û
>W1610005387
AJVG01000024
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
33891
33965
+
Lys
TTT
[ENA]
¡û
>W1610011742
AOHS01000063
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
59714
59788
+
Lys
TTT
[ENA]
¡û
>W1610011904
AOHW01000009
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
730
656
-
Lys
TTT
[ENA]
¡û
>W1610011958
AOHX01000037
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
719
645
-
Lys
TTT
[ENA]
¡û
>W1610012002
AOHY01000025
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
967
893
-
Lys
TTT
[ENA]
¡û
>W1610012049
AOHZ01000059
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
4960
4886
-
Lys
TTT
[ENA]
¡û
>W1610012068
AOIA01000026
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
19586
19660
+
Lys
TTT
[ENA]
¡û
>W1610012161
AOIC01000046
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
64488
64562
+
Lys
TTT
[ENA]
¡û
>W1610012280
AOII01000009
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
2296
2222
-
Lys
TTT
[ENA]
¡û
>W1610012341
AOIJ01000049
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
222207
222281
+
Lys
TTT
[ENA]
¡û
>W1610012411
AOIK01000045
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
39504
39578
+
Lys
TTT
[ENA]
¡û
>W1610012446
AOIL01000055
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
4547
4473
-
Lys
TTT
[ENA]
¡û
>W1610012470
AOIM01000019
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
42835
42909
+
Lys
TTT
[ENA]
¡û
>W1610012507
AOIN01000040
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
3338
3265
-
Lys
TTT
[ENA]
¡û
>W1610012539
AOIO01000011
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
1436
1362
-
Lys
TTT
[ENA]
¡û
>W1610012581
AOIP01000003
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
5643
5569
-
Lys
TTT
[ENA]
¡û
>W1610012773
AOIT01000024
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
851
777
-
Lys
TTT
[ENA]
¡û
>W1610014403
AOLZ01000004
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
25300
25374
+
Lys
TTT
[ENA]
¡û
>W1610014472
AOMA01000147
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
1292
1366
+
Lys
TTT
[ENA]
¡û
>W1610019031
ARPH01000005
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
744
670
-
Lys
TTT
[ENA]
¡û
>W1610046866
BBCV01000062
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
21716
21790
+
Lys
TTT
[ENA]
¡û
>W1610082973
CBMA010000021
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
17498
17572
+
Lys
TTT
[ENA]
¡û
>W1610083025
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
1088716
1088643
-
Lys
TTT
[ENA]
¡û
>W1610671388
LKCV01000180
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
5072
4998
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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