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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274534 (24 seq.)
>W1711582137
MNUZ01000083
Campylobacterota
Helicobacteraceae bacterium CG1_02_36_14 [MNUZ]
30509
30434
-
Trp
CCA
[ENA]
¡û
>W1711584547
MNYP01000147
Campylobacterota
Helicobacteraceae bacterium CG2_30_36_10 [MNYP]
12288
12213
-
Trp
CCA
[ENA]
¡û
>WENV180099263
NKAJ01000959
[NKAJ] marine sediment metagenome; Jiulong cold seep at northern South China Sea
722
647
-
Trp
CCA
[ENA]
¡û
>WENV180288415
OBIL01162449
[OBIL] metagenome; hydrothermal vent
54
129
+
Trp
CCA
[ENA]
¡û
>WENV180345525
OBLN01000495
[OBLN] sediment metagenome; sediment
10600
10675
+
Trp
CCA
[ENA]
¡û
>WENV180582188
OCMO01007964
[OCMO] metagenome; diffuse fluid
186
111
-
Trp
CCA
[ENA]
¡û
>WENV180582697
OCMR01047660
[OCMR] metagenome; diffuse fluid
109
184
+
Trp
CCA
[ENA]
¡û
>WENV180583225
OCNB01013469
[OCNB] metagenome; diffuse fluid
376
301
-
Trp
CCA
[ENA]
¡û
>W141083614
AUPZ01000009
Campylobacterota
Sulfurimonas hongkongensis AST-10 [AUPZ]
17160
17085
-
Trp
CCA
[ENA]
¡û
>WENV181208885
OFBC01020340
[OFBC] metagenome; hydrothermal vent
336
411
+
Trp
CCA
[ENA]
¡û
>WENV181224065
OFDD01014726
[OFDD] metagenome; hydrothermal vent
551
476
-
Trp
CCA
[ENA]
¡û
>WENV170575655
FPHH01000121
[FPHH] hydrothermal vent metagenome genome assembly, contig: NODE_101.; water
1036
1111
+
Trp
CCA
[ENA]
¡û
>WENV170575723
FPHK01000087
[FPHK] hydrothermal vent metagenome genome assembly, contig: NODE_31.; water
307
382
+
Trp
CCA
[ENA]
¡û
>WENV170657695
JTFP01010937
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
712
787
+
Trp
CCA
[ENA]
¡û
>WENV170693092
LGOV01082037
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1178
1103
-
Trp
CCA
[ENA]
¡û
>WENV170695304
LGVE01073654
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
714
639
-
Trp
CCA
[ENA]
¡û
>W2011751839
SZPX01000001
Campylobacterota
Sulfurimonas sp. SN118 [SZPX]
334787
334862
+
Trp
CCA
[ENA]
¡û
>C201092963
CP041166
Campylobacterota
Sulfurimonas sp. 1-1N [CP041166]
240703
240778
+
Trp
CCA
-
¡û
>C211052465
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
325539
325614
+
Trp
CCA
-
¡û
>C211052642
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
224550
224625
+
Trp
CCA
-
¡û
>C231194009
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
307314
307389
+
Trp
CCA
-
¡û
>C241040225
CP033720
Campylobacterota
Sulfurimonas sp. CVO [CP033720]
1606749
1606674
-
Trp
CCA
-
¡û
>C241042996
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
2021508
2021433
-
Trp
CCA
-
¡û
>C11119324
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
287373
287448
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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