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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27474 (12 seq.)
>w027438
ABCE01000017
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
123407
123316
-
Ser
GGA
[ENA]
¡û
>WENV170120779
CENL01003134
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
25848
25935
+
Ser
GGA
[ENA]
¡û
>WENV170626604
FUWD013226640
[FUWD] metagenome; unknown
1181
1268
+
Ser
GGA
[ENA]
¡û
>SRA1027636
SRR035086.165559
454 Sequencing (SRP001807)
479
392
-
Ser
GGA
[SRA]
>SRA1028717
SRR035086.407903
454 Sequencing (SRP001807)
152
239
+
Ser
GGA
[SRA]
>W2012143768
VTSR01000020
Planctomycetota
Gimesia sp. JC646 [VTSR]
208522
208609
+
Ser
GGA
[ENA]
¡û
>C241044036
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
5233980
5234067
+
Ser
GGA
-
¡û
>C241044485
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
5395133
5395220
+
Ser
GGA
-
¡û
>C241044554
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
5177280
5177367
+
Ser
GGA
-
¡û
>C241069943
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
5341577
5341664
+
Ser
GGA
-
¡û
>C241083581
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
6616980
6616893
-
Ser
GGA
-
¡û
>C241083656
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
2356469
2356382
-
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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