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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275126 (46 seq.)
>C171057588
CP017125
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [CP017125]
871256
871332
+
Pro
TGG
-
¡û
>C171088928
CP019061
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae zly1309F [CP019061]
871218
871294
+
Pro
TGG
-
¡û
>W131061533
ANIV01000011
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [ANIV]
34304
34228
-
Pro
TGG
[ENA]
¡û
>C013252
CP000123
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum ATCC 27343 [CP000123]
863305
863381
+
Pro
TGG
[Ensembl]
¡û
>w025289
AAZK01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides LC str. GM12 [AAZK]
225720
225642
-
Pro
TGG
[ENA]
¡û
>W141450921
JFAE01000005
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [JFAE]
53194
53118
-
Pro
TGG
[ENA]
¡û
>W141455525
JFDO01000030
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14232 [JFDO]
2961
3037
+
Pro
TGG
[ENA]
¡û
>C181199916
CP031376
Mycoplasmatota
Spiroplasma alleghenense PLHS-1 [CP031376]
177778
177854
+
Pro
TGG
-
¡û
>C191217986
LR214938
Mycoplasmatota
Metamycoplasma salivarium NCTC10113 [LR214938]
848400
848476
+
Pro
TGG
-
¡û
>C191224064
LS483500
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483500]
861031
861107
+
Pro
TGG
-
¡û
>C191224094
LS483501
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483501]
863423
863499
+
Pro
TGG
-
¡û
>C191224124
LS483502
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483502]
861217
861293
+
Pro
TGG
-
¡û
>C191224154
LS483503
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483503]
781176
781252
+
Pro
TGG
-
¡û
>C191224184
LS483504
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483504]
861526
861602
+
Pro
TGG
-
¡û
>C191224213
LS483505
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483505]
864351
864427
+
Pro
TGG
-
¡û
>C191224243
LS483506
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483506]
857340
857416
+
Pro
TGG
-
¡û
>C191224273
LS483507
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483507]
856788
856864
+
Pro
TGG
-
¡û
>C191224301
LS483508
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483508]
849857
849933
+
Pro
TGG
-
¡û
>C191224331
LS483509
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483509]
860142
860218
+
Pro
TGG
-
¡û
>C191224361
LS483510
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483510]
855505
855581
+
Pro
TGG
-
¡û
>C191224390
LS483511
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483511]
857854
857930
+
Pro
TGG
-
¡û
>C191224420
LS483512
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483512]
865124
865200
+
Pro
TGG
-
¡û
>C191224450
LS483513
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483513]
862909
862985
+
Pro
TGG
-
¡û
>C191224480
LS483514
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483514]
864991
865067
+
Pro
TGG
-
¡û
>C191224509
LS483515
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483515]
865124
865200
+
Pro
TGG
-
¡û
>C191224539
LS483516
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483516]
855680
855756
+
Pro
TGG
-
¡û
>C191224569
LS483517
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483517]
858625
858701
+
Pro
TGG
-
¡û
>C191224599
LS483518
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483518]
864995
865071
+
Pro
TGG
-
¡û
>C191224628
LS483519
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483519]
862418
862494
+
Pro
TGG
-
¡û
>W141700852
JMJI01000005
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 99108 [JMJI]
18180
18104
-
Pro
TGG
[ENA]
¡û
>W1910598091
LAUU01000003
Mycoplasmatota
Mycoplasma leachii 6049 [LAUU]
49125
49049
-
Pro
TGG
[ENA]
¡û
>SRA1015068
SRR023845.446639
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
190
114
-
Pro
TGG
[SRA]
>C151014904
CP006934
Mycoplasmatota
Spiroplasma sabaudiense Ar-1343 [CP006934]
146712
146788
+
Pro
TGG
[Ensembl]
¡û
>C151015553
CP006959
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 87001 [CP006959]
871827
871903
+
Pro
TGG
[Ensembl]
¡û
>C151094658
CP012387
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [CP012387]
865124
865200
+
Pro
TGG
-
¡û
>C151102620
LM995445
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 9231-Aboms [LM995445]
871805
871881
+
Pro
TGG
[Ensembl]
¡û
>C151102891
LN515398
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae type strain: F38 [LN515398]
871278
871354
+
Pro
TGG
[Ensembl]
¡û
>C151102920
LN515399
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae ILRI181 [LN515399]
871676
871752
+
Pro
TGG
[Ensembl]
¡û
>C11114584
FR668087
Mycoplasmatota
Mycoplasma leachii 99/014/6 [FR668087]
812480
812556
+
Pro
TGG
[Ensembl]
¡û
>C11114614
CP002108
Mycoplasmatota
Mycoplasma leachii PG50 [CP002108]
848633
848709
+
Pro
TGG
[Ensembl]
¡û
>C11114798
CP001621
Mycoplasmatota
Mycoplasma mycoides [CP001621]
856484
856560
+
Pro
TGG
[Ensembl]
¡û
>W1511508407
JXQB01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum GM508D [JXQB]
625015
624939
-
Pro
TGG
[ENA]
¡û
>W11141017
AENG01000002
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [AENG]
109758
109834
+
Pro
TGG
[ENA]
¡û
>W1511594888
LBMF01000007
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14DL0024 [LBMF]
111349
111425
+
Pro
TGG
[ENA]
¡û
>C121001656
CP001668
Mycoplasmatota
Mycoplasma mycoides [CP001668]
862755
862831
+
Pro
TGG
-
¡û
>C121016876
FQ377874
Mycoplasmatota
Mycoplasma mycoides subsp. capri LC str. 95010 [FQ377874]
928447
928523
+
Pro
TGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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