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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275129 (100 seq.)
>C171057603
CP017125
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [CP017125]
794961
794885
-
Ile
GAT
-
¡û
>C171088943
CP019061
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae zly1309F [CP019061]
794935
794859
-
Ile
GAT
-
¡û
>W131058736
ANFU01000002
Mycoplasmatota
Mycoplasma feriruminatoris G5847 [ANFU]
11226
11150
-
Ile
GAT
[ENA]
¡û
>W131061531
ANIV01000011
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [ANIV]
111440
111516
+
Ile
GAT
[ENA]
¡û
>W131098316
AORK01000021
Mycoplasmatota
Mycoplasma yeatsii 13926 [AORK]
59455
59531
+
Ile
GAT
[ENA]
¡û
>C013267
CP000123
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum ATCC 27343 [CP000123]
786845
786769
-
Ile
GAT
[Ensembl]
¡û
>C013433
AE017263
Mycoplasmatota
Mesoplasma florum L1 L1; ATCC 33453 [AE017263]
576701
576625
-
Ile
GAT
[Ensembl]
¡û
>C013870
BX293980
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. PG1 [BX293980]
814351
814275
-
Ile
GAT
[Ensembl]
¡û
>w025277
AAZK01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides LC str. GM12 [AAZK]
303674
303752
+
Ile
GAT
[ENA]
¡û
>W141170401
AXXW01000005
Mycoplasmatota
[Acholeplasma] multilocale ATCC 49900 [AXXW]
122301
122225
-
Ile
GAT
[ENA]
¡û
>W141275816
JADH01000004
Mycoplasmatota
Williamsoniiplasma lucivorax ATCC 49196 [JADH]
57548
57472
-
Ile
GAT
[ENA]
¡û
>W141276877
JAED01000009
Mycoplasmatota
Mesoplasma seiffertii ATCC 49495 [JAED]
28360
28436
+
Ile
GAT
[ENA]
¡û
>W141277117
JAEI01000015
Mycoplasmatota
Mesoplasma chauliocola ATCC 49578 [JAEI]
37748
37672
-
Ile
GAT
[ENA]
¡û
>W141280194
JAGV01000002
Mycoplasmatota
Williamsoniiplasma somnilux ATCC 49194 [JAGV]
92830
92754
-
Ile
GAT
[ENA]
¡û
>W141280198
JAGW01000001
Mycoplasmatota
Williamsoniiplasma luminosum ATCC 49195 [JAGW]
42866
42942
+
Ile
GAT
[ENA]
¡û
>W141450933
JFAE01000006
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [JFAE]
71419
71495
+
Ile
GAT
[ENA]
¡û
>W141455523
JFDO01000026
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14232 [JFDO]
5144
5068
-
Ile
GAT
[ENA]
¡û
>C181067075
CP022505
Mycoplasmatota
Mesoplasma florum W23 [CP022505]
558647
558571
-
Ile
GAT
-
¡û
>C181067104
CP022508
Mycoplasmatota
Mesoplasma florum MouA-2 [CP022508]
568125
568049
-
Ile
GAT
-
¡û
>C181067133
CP022512
Mycoplasmatota
Mesoplasma florum MQ3 [CP022512]
589255
589179
-
Ile
GAT
-
¡û
>C181067162
CP022513
Mycoplasmatota
Mesoplasma florum CnuA-2 [CP022513]
597498
597422
-
Ile
GAT
-
¡û
>C181067191
CP022514
Mycoplasmatota
Mesoplasma florum BARC 787 [CP022514]
537287
537211
-
Ile
GAT
-
¡û
>C181076784
CP023173
Mycoplasmatota
Mesoplasma chauliocola CHPA-2 [CP023173]
619641
619565
-
Ile
GAT
-
¡û
>C181088623
CP023668
Mycoplasmatota
Mesoplasma lactucae ATCC 49193 831-C4 [CP023668]
81795
81871
+
Ile
GAT
-
¡û
>C181089576
CP023735
Mycoplasmatota
Mesoplasma florum GF1 [CP023735]
601610
601534
-
Ile
GAT
-
¡û
>C181089605
CP023736
Mycoplasmatota
Mesoplasma florum PPA1 [CP023736]
590663
590587
-
Ile
GAT
-
¡û
>C181089612
CP023736
Mycoplasmatota
Mesoplasma florum PPA1 [CP023736]
349244
349168
-
Ile
GAT
-
¡û
>C181099509
CP024411
Mycoplasmatota
Mesoplasma entomophilum TAC [CP024411]
620596
620520
-
Ile
GAT
-
¡û
>C181109441
CP024962
Mycoplasmatota
Entomoplasma freundtii BARC 318 [CP024962]
696515
696591
+
Ile
GAT
-
¡û
>C181109453
CP024963
Mycoplasmatota
Williamsoniiplasma luminosum PIMN-1 [CP024963]
391295
391371
+
Ile
GAT
-
¡û
>C181109506
CP024964
Mycoplasmatota
Mesoplasma melaleucae M1 [CP024964]
628543
628467
-
Ile
GAT
-
¡û
>C181109513
CP024965
Mycoplasmatota
Williamsoniiplasma somnilux PYAN-1 [CP024965]
187597
187673
+
Ile
GAT
-
¡û
>C181109565
CP024966
Mycoplasmatota
Mesoplasma entomophilum TAC [CP024966]
620596
620520
-
Ile
GAT
-
¡û
>C181109601
CP024967
Mycoplasmatota
Mesoplasma lactucae ATCC 49193 831-C4 [CP024967]
629116
629040
-
Ile
GAT
-
¡û
>C181109625
CP024968
Mycoplasmatota
Mesoplasma coleopterae BARC 779 [CP024968]
586257
586181
-
Ile
GAT
-
¡û
>C181109654
CP024969
Mycoplasmatota
Mesoplasma tabanidae BARC 857 [CP024969]
623694
623618
-
Ile
GAT
-
¡û
>C181115101
CP025257
Mycoplasmatota
Mesoplasma syrphidae YJS [CP025257]
182720
182796
+
Ile
GAT
-
¡û
>C181144784
CP027019
Mycoplasmatota
Williamsoniiplasma luminosum [CP027019]
930630
930706
+
Ile
GAT
-
¡û
>C191218001
LR214938
Mycoplasmatota
Metamycoplasma salivarium NCTC10113 [LR214938]
768642
768566
-
Ile
GAT
-
¡û
>C191224077
LS483500
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483500]
783079
783003
-
Ile
GAT
-
¡û
>C191224107
LS483501
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483501]
785467
785391
-
Ile
GAT
-
¡û
>C191224137
LS483502
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483502]
783276
783200
-
Ile
GAT
-
¡û
>C191224167
LS483503
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483503]
703220
703144
-
Ile
GAT
-
¡û
>C191224196
LS483504
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483504]
783720
783644
-
Ile
GAT
-
¡û
>C191224226
LS483505
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483505]
786395
786319
-
Ile
GAT
-
¡û
>C191224256
LS483506
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483506]
779384
779308
-
Ile
GAT
-
¡û
>C191224286
LS483507
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483507]
778832
778756
-
Ile
GAT
-
¡û
>C191224314
LS483508
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483508]
772977
772901
-
Ile
GAT
-
¡û
>C191224344
LS483509
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483509]
782186
782110
-
Ile
GAT
-
¡û
>C191224373
LS483510
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483510]
777549
777473
-
Ile
GAT
-
¡û
>C191224403
LS483511
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483511]
779898
779822
-
Ile
GAT
-
¡û
>C191224433
LS483512
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483512]
787168
787092
-
Ile
GAT
-
¡û
>C191224463
LS483513
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483513]
784953
784877
-
Ile
GAT
-
¡û
>C191224492
LS483514
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483514]
787035
786959
-
Ile
GAT
-
¡û
>C191224522
LS483515
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483515]
787168
787092
-
Ile
GAT
-
¡û
>C191224552
LS483516
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483516]
777724
777648
-
Ile
GAT
-
¡û
>C191224582
LS483517
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483517]
780669
780593
-
Ile
GAT
-
¡û
>C191224612
LS483518
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483518]
787039
786963
-
Ile
GAT
-
¡û
>C191224641
LS483519
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483519]
784462
784386
-
Ile
GAT
-
¡û
>C191224901
LS991954
Mycoplasmatota
Mycoplasma putrefaciens NCTC10155 [LS991954]
178694
178770
+
Ile
GAT
-
¡û
>W09100990
AADU01000001
Mycoplasmatota
Mesoplasma florum L1 [AADU]
576701
576625
-
Ile
GAT
[ENA]
¡û
>W141700864
JMJI01000010
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 99108 [JMJI]
2916
2992
+
Ile
GAT
[ENA]
¡û
>W141701659
JMKV01000003
Mycoplasmatota
Mesoplasma syrphidae ATCC 51578 [JMKV]
24613
24689
+
Ile
GAT
[ENA]
¡û
>W141701739
JMKX01000003
Mycoplasmatota
Mesoplasma melaleucae ATCC 49191 [JMKX]
43521
43445
-
Ile
GAT
[ENA]
¡û
>W141731422
JNJC01000001
Mycoplasmatota
Mesoplasma grammopterae ATCC 49580 [JNJC]
68103
68027
-
Ile
GAT
[ENA]
¡û
>W141731672
JNJI01000002
Mycoplasmatota
Mesoplasma photuris ATCC 49581 [JNJI]
102194
102118
-
Ile
GAT
[ENA]
¡û
>C141008503
CP006778
Mycoplasmatota
Mesoplasma florum W37 [CP006778]
584865
584789
-
Ile
GAT
[Ensembl]
¡û
>W1910597434
LATJ01000012
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides PO-67 [LATJ]
4835
4759
-
Ile
GAT
[ENA]
¡û
>W1910598103
LAUU01000004
Mycoplasmatota
Mycoplasma leachii 6049 [LAUU]
76863
76939
+
Ile
GAT
[ENA]
¡û
>W1910598120
LAUV01000012
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B345/93 [LAUV]
4854
4778
-
Ile
GAT
[ENA]
¡û
>W1910598151
LAUW01000017
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides C425/93 [LAUW]
4855
4779
-
Ile
GAT
[ENA]
¡û
>W1910598189
LAUX01000096
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides KH3J [LAUX]
166
90
-
Ile
GAT
[ENA]
¡û
>W1810115733
PHNE01000001
Mycoplasmatota
Williamsoniiplasma lucivorax PIPN-2 [PHNE]
476829
476905
+
Ile
GAT
[ENA]
¡û
>SRA1015169
SRR023845.485762
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
216
140
-
Ile
GAT
[SRA]
>C151015568
CP006959
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 87001 [CP006959]
795533
795457
-
Ile
GAT
[Ensembl]
¡û
>C151026397
CP007520
Mycoplasmatota
Mycoplasma yeatsii GM274B [CP007520]
769659
769583
-
Ile
GAT
[Ensembl]
¡û
>C151064925
CP010267
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides izsam_mm5713 [CP010267]
816551
816475
-
Ile
GAT
[Ensembl]
¡û
>C151094671
CP012387
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [CP012387]
787168
787092
-
Ile
GAT
-
¡û
>C151102635
LM995445
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 9231-Aboms [LM995445]
795508
795432
-
Ile
GAT
[Ensembl]
¡û
>C151102906
LN515398
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae type strain: F38 [LN515398]
794975
794899
-
Ile
GAT
[Ensembl]
¡û
>C151102935
LN515399
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae ILRI181 [LN515399]
795359
795283
-
Ile
GAT
[Ensembl]
¡û
>C10109482
CP002107
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. Gladysdale [CP002107]
825391
825315
-
Ile
GAT
[Ensembl]
¡û
>C11114599
FR668087
Mycoplasmatota
Mycoplasma leachii 99/014/6 [FR668087]
731098
731022
-
Ile
GAT
[Ensembl]
¡û
>C11114629
CP002108
Mycoplasmatota
Mycoplasma leachii PG50 [CP002108]
768875
768799
-
Ile
GAT
[Ensembl]
¡û
>C11114811
CP001621
Mycoplasmatota
Mycoplasma mycoides [CP001621]
778528
778452
-
Ile
GAT
[Ensembl]
¡û
>C11115062
CP003021
Mycoplasmatota
Mycoplasma putrefaciens KS1 [CP003021]
178697
178773
+
Ile
GAT
[Ensembl]
¡û
>W1511508395
JXQB01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum GM508D [JXQB]
703168
703244
+
Ile
GAT
[ENA]
¡û
>W11141032
AENG01000002
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [AENG]
33463
33387
-
Ile
GAT
[ENA]
¡û
>W1511565151
LAEW01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B237 [LAEW]
824812
824736
-
Ile
GAT
[ENA]
¡û
>W1511565182
LAEX01000007
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Afade [LAEX]
215533
215457
-
Ile
GAT
[ENA]
¡û
>W1511594903
LBMF01000007
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14DL0024 [LBMF]
33424
33348
-
Ile
GAT
[ENA]
¡û
>C121001669
CP001668
Mycoplasmatota
Mycoplasma mycoides [CP001668]
784799
784723
-
Ile
GAT
-
¡û
>C121016889
FQ377874
Mycoplasmatota
Mycoplasma mycoides subsp. capri LC str. 95010 [FQ377874]
844022
843946
-
Ile
GAT
[Ensembl]
¡û
>C161033057
CP011260
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben1 [CP011260]
797688
797612
-
Ile
GAT
-
¡û
>C161033086
CP011261
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben50 [CP011261]
802813
802737
-
Ile
GAT
-
¡û
>C161033115
CP011262
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben181 [CP011262]
796995
796919
-
Ile
GAT
-
¡û
>C161033145
CP011263
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben326 [CP011263]
788393
788317
-
Ile
GAT
-
¡û
>C161033174
CP011264
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben468 [CP011264]
752164
752088
-
Ile
GAT
-
¡û
>C161071653
CP014346
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides T1/44 [CP014346]
507870
507946
+
Ile
GAT
[Ensembl]
¡û
>C131013529
CP004357
Mycoplasmatota
Mycoplasma putrefaciens Mput9231 [CP004357]
682738
682662
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK