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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275129 (67 seq.)
>W1711094778
LTGG01000058
Betaproteobacteria
Eikenella sp. HMSC071B05 [LTGG]
2852
2929
+
Pro
TGG
[ENA]
¡û
>W1711099436
LTKM01000052
Betaproteobacteria
Eikenella sp. HMSC061C02 [LTKM]
14993
15070
+
Pro
TGG
[ENA]
¡û
>W1711107388
LTST01000013
Betaproteobacteria
Eikenella sp. HMSC073A11 [LTST]
20374
20297
-
Pro
TGG
[ENA]
¡û
>W1711222611
LXSE01000035
Betaproteobacteria
Eikenella corrodens [LXSE]
40445
40522
+
Pro
TGG
[ENA]
¡û
>W1711222643
LXSF01000006
Betaproteobacteria
Eikenella corrodens [LXSF]
70898
70975
+
Pro
TGG
[ENA]
¡û
>W1711222704
LXSG01000039
Betaproteobacteria
Eikenella corrodens [LXSG]
21254
21177
-
Pro
TGG
[ENA]
¡û
>W1711222750
LXSH01000033
Betaproteobacteria
Eikenella corrodens [LXSH]
24672
24595
-
Pro
TGG
[ENA]
¡û
>W1711222780
LXSI01000008
Betaproteobacteria
Eikenella corrodens [LXSI]
14185
14262
+
Pro
TGG
[ENA]
¡û
>W1711222824
LXSJ01000030
Betaproteobacteria
Eikenella corrodens [LXSJ]
3047
3124
+
Pro
TGG
[ENA]
¡û
>W1711222866
LXSK01000007
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
114988
114911
-
Pro
TGG
[ENA]
¡û
>W1711222892
LXSL01000011
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
127843
127766
-
Pro
TGG
[ENA]
¡û
>W1711222942
LXSM01000003
Betaproteobacteria
Eikenella sp. NML03-A-027 [LXSM]
144115
144192
+
Pro
TGG
[ENA]
¡û
>W1711223006
LXSN01000005
Betaproteobacteria
Eikenella sp. NML070372 [LXSN]
76293
76370
+
Pro
TGG
[ENA]
¡û
>W1711223055
LXSO01000011
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
116194
116117
-
Pro
TGG
[ENA]
¡û
>W1711223094
LXSP01000004
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
116661
116584
-
Pro
TGG
[ENA]
¡û
>W1711223118
LXSQ01000016
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
71791
71714
-
Pro
TGG
[ENA]
¡û
>W1711223153
LXSR01000012
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
34141
34218
+
Pro
TGG
[ENA]
¡û
>W1711223199
LXSS01000009
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
114824
114747
-
Pro
TGG
[ENA]
¡û
>W1711223254
LXST01000003
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
115541
115618
+
Pro
TGG
[ENA]
¡û
>W1712084755
NHRS01000001
Betaproteobacteria
Eikenella corrodens [NHRS]
205783
205860
+
Pro
TGG
[ENA]
¡û
>W131221593
AUAP01000003
Betaproteobacteria
Conchiformibius kuhniae DSM 17694 [AUAP]
51453
51376
-
Pro
TGG
[ENA]
¡û
>WENV180814832
ODJO01069317
[ODJO] human metagenome; G_DNA_Supragingival plaque
78
1
-
Pro
TGG
[ENA]
¡û
>WENV180861486
ODLE01004578
[ODLE] human metagenome; G_DNA_Tongue dorsum
2423
2500
+
Pro
TGG
[ENA]
¡û
>WENV180924453
ODTK01005395
[ODTK] human metagenome; G_DNA_Supragingival plaque
2505
2428
-
Pro
TGG
[ENA]
¡û
>WENV180934324
ODTR01118033
[ODTR] human metagenome; G_DNA_Supragingival plaque
161
84
-
Pro
TGG
[ENA]
¡û
>WENV181003163
ODVX01006084
[ODVX] human metagenome; G_DNA_Supragingival plaque
2380
2303
-
Pro
TGG
[ENA]
¡û
>W141202105
AZGQ01000004
Betaproteobacteria
Eikenella corrodens CC92I [AZGQ]
189014
189091
+
Pro
TGG
[ENA]
¡û
>WENV183510498
OMHO01006466
[OMHO] human oral metagenome; human oral
360
437
+
Pro
TGG
[ENA]
¡û
>C181226765
LT906482
Betaproteobacteria
Eikenella corrodens NCTC10596 [LT906482]
397596
397673
+
Pro
TGG
-
¡û
>C191128741
CP034670
Betaproteobacteria
Eikenella corrodens KCOM 3110 [CP034670]
2014810
2014733
-
Pro
TGG
-
¡û
>W141562947
JHZP01000004
Betaproteobacteria
Conchiformibius steedae DSM 2580 [JHZP]
125052
124975
-
Pro
TGG
[ENA]
¡û
>W09119689
ACEA01000012
Betaproteobacteria
Eikenella corrodens ATCC 23834 [ACEA]
40453
40530
+
Pro
TGG
[ENA]
¡û
>W2011483265
RQYC01000034
Betaproteobacteria
Conchiformibius steedae COT-280 [RQYC]
2236
2313
+
Pro
TGG
[ENA]
¡û
>W2011955220
UYIU01000001
Campylobacterota
Helicobacter pametensis NCTC12888 [UYIU]
303387
303464
+
Pro
TGG
[ENA]
¡û
>W2012212632
VYYK01000015
Betaproteobacteria
Eikenella corrodens EI_09 [VYYK]
31216
31293
+
Pro
TGG
[ENA]
¡û
>W2012212678
VYYL01000061
Betaproteobacteria
Eikenella corrodens EI_08 [VYYL]
10333
10256
-
Pro
TGG
[ENA]
¡û
>W2012212712
VYYM01000030
Betaproteobacteria
Eikenella corrodens EI_07 [VYYM]
15473
15550
+
Pro
TGG
[ENA]
¡û
>W2012212761
VYYN01000055
Betaproteobacteria
Eikenella corrodens EI_06 [VYYN]
10332
10255
-
Pro
TGG
[ENA]
¡û
>W2012212800
VYYO01000018
Betaproteobacteria
Eikenella corrodens EI_05 [VYYO]
4826
4903
+
Pro
TGG
[ENA]
¡û
>W2012212849
VYYP01000021
Betaproteobacteria
Eikenella corrodens EI_04 [VYYP]
14615
14692
+
Pro
TGG
[ENA]
¡û
>W2012212911
VYYQ01000063
Betaproteobacteria
Eikenella corrodens EI_03 [VYYQ]
3901
3824
-
Pro
TGG
[ENA]
¡û
>W2012212933
VYYR01000004
Betaproteobacteria
Eikenella exigua EI_02 [VYYR]
78863
78786
-
Pro
TGG
[ENA]
¡û
>W2012212981
VYYS01000005
Betaproteobacteria
Eikenella corrodens EI_01 [VYYS]
38312
38235
-
Pro
TGG
[ENA]
¡û
>W2110132046
CAKAJZ010000002
Betaproteobacteria
Eikenella sp. Marseille-P7795 [CAKAJZ]
267480
267403
-
Pro
TGG
[ENA]
¡û
>W2110250997
JACSGR010000002
Betaproteobacteria
Eikenella sp. S3360 [JACSGR]
100920
100997
+
Pro
TGG
[ENA]
¡û
>C211398693
CP082861
Betaproteobacteria
Eikenella corrodens FDAARGOS_1474 [CP082861]
663417
663340
-
Pro
TGG
-
¡û
>C231300350
CP091521
Betaproteobacteria
Conchiformibius kuhniae 17694 [CP091521]
1193715
1193792
+
Pro
TGG
-
¡û
>C231385736
CP097501
Betaproteobacteria
Conchiformibius steedae DSM 2580 [CP097501]
753564
753641
+
Pro
TGG
-
¡û
>C241045511
CP038018
Betaproteobacteria
Eikenella exigua PXX [CP038018]
1425465
1425388
-
Pro
TGG
-
¡û
>C241178105
CP059563
Betaproteobacteria
Conchiformibius steedae DSM 2580 [CP059563]
87770
87847
+
Pro
TGG
-
¡û
>W1511453333
JVFA01000092
Betaproteobacteria
Eikenella corrodens 491_NMEN [JVFA]
45191
45114
-
Pro
TGG
[ENA]
¡û
>W1611007024
LXSE01000035
Betaproteobacteria
Eikenella corrodens [LXSE]
40445
40522
+
Pro
TGG
[ENA]
¡û
>W1611007056
LXSF01000006
Betaproteobacteria
Eikenella corrodens [LXSF]
70898
70975
+
Pro
TGG
[ENA]
¡û
>W1611007117
LXSG01000039
Betaproteobacteria
Eikenella corrodens [LXSG]
21254
21177
-
Pro
TGG
[ENA]
¡û
>W1611007163
LXSH01000033
Betaproteobacteria
Eikenella corrodens [LXSH]
24672
24595
-
Pro
TGG
[ENA]
¡û
>W1611007193
LXSI01000008
Betaproteobacteria
Eikenella corrodens [LXSI]
14185
14262
+
Pro
TGG
[ENA]
¡û
>W1611007237
LXSJ01000030
Betaproteobacteria
Eikenella corrodens [LXSJ]
3047
3124
+
Pro
TGG
[ENA]
¡û
>W1611007279
LXSK01000007
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
114988
114911
-
Pro
TGG
[ENA]
¡û
>W1611007305
LXSL01000011
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
127843
127766
-
Pro
TGG
[ENA]
¡û
>W1611007355
LXSM01000003
Betaproteobacteria
Eikenella sp. NML03-A-027 [LXSM]
144115
144192
+
Pro
TGG
[ENA]
¡û
>W1611007419
LXSN01000005
Betaproteobacteria
Eikenella sp. NML070372 [LXSN]
76293
76370
+
Pro
TGG
[ENA]
¡û
>W1611007468
LXSO01000011
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
116194
116117
-
Pro
TGG
[ENA]
¡û
>W1611007507
LXSP01000004
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
116661
116584
-
Pro
TGG
[ENA]
¡û
>W1611007531
LXSQ01000016
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
71791
71714
-
Pro
TGG
[ENA]
¡û
>W1611007566
LXSR01000012
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
34141
34218
+
Pro
TGG
[ENA]
¡û
>W1611007612
LXSS01000009
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
114824
114747
-
Pro
TGG
[ENA]
¡û
>W1611007667
LXST01000003
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
115541
115618
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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