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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275205 (59 seq.)
>W1710853426
LLWQ01000217
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
21037
20961
-
Met
CAT
[ENA]
¡û
>W1710889756
LNBC01000030
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
108235
108311
+
Met
CAT
[ENA]
¡û
>W1712104738
NIPZ01000009
Alphaproteobacteria
Paracoccus yeei [NIPZ]
71203
71127
-
Met
CAT
[ENA]
¡û
>W131158895
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
2057130
2057206
+
Met
CAT
[ENA]
¡û
>C016011
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
894322
894398
+
Met
CAT
[Ensembl]
¡û
>C171107680
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
2232115
2232039
-
Met
CAT
-
¡û
>C171110757
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
488091
488167
+
Met
CAT
-
¡û
>WENV180039171
LLBY010031803
[LLBY] soil metagenome; soil from tomato rhizosphere
1238
1314
+
Met
CAT
[ENA]
¢þ
>W141216645
AZVA01000037
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
2411
2335
-
Met
CAT
[ENA]
¡û
>W141277308
JAEM01000012
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
35683
35759
+
Met
CAT
[ENA]
¡û
>W141277369
JAEN01000015
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
1823
1747
-
Met
CAT
[ENA]
¡û
>W141279587
JAGK01000027
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
35683
35759
+
Met
CAT
[ENA]
¡û
>WENV183741064
PJUF01034034
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
226
302
+
Met
CAT
[ENA]
¢þ
>WENV170564882
CZPY01000030
[CZPY] metagenome; PAHs-polluted Soil
108235
108311
+
Met
CAT
[ENA]
¢þ
>PL191000040
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
894322
894398
+
Met
CAT
[Ensembl]
¡û
>C181099798
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
1737660
1737584
-
Met
CAT
-
¡û
>C181117192
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
3539911
3539835
-
Met
CAT
-
¡û
>C181190842
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
2217371
2217295
-
Met
CAT
-
¡û
>C181194178
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
3245582
3245658
+
Met
CAT
-
¡û
>C181203412
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
2313676
2313600
-
Met
CAT
-
¡û
>C191073609
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
368985
368909
-
Met
CAT
-
¡û
>C191134382
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
2488721
2488797
+
Met
CAT
-
¡û
>W141558855
JHWH01000002
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
72858
72934
+
Met
CAT
[ENA]
¡û
>W09103031
AAIT01000001
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
151152
151228
+
Met
CAT
[ENA]
¡û
>C141006340
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
3043620
3043544
-
Met
CAT
[Ensembl]
¡û
>W1911245340
NSJZ01000012
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
11633
11557
-
Met
CAT
[ENA]
¡û
>W1911397904
NWMQ01000005
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
97326
97402
+
Met
CAT
[ENA]
¡û
>W1911495032
OBMN01000005
Alphaproteobacteria
Phaeovulum vinaykumarii JA123 [OBMN]
183946
184022
+
Met
CAT
[ENA]
¡û
>W1911698487
QNRC01000002
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
131836
131760
-
Met
CAT
[ENA]
¡û
>W1911813230
QZEW01000006
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
4059
3983
-
Met
CAT
[ENA]
¡û
>W1810235969
PPGA01000002
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
464289
464365
+
Met
CAT
[ENA]
¡û
>W1810585322
QFCQ01000066
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
5697
5773
+
Met
CAT
[ENA]
¡û
>W1810750730
QOZU01000006
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
5309
5385
+
Met
CAT
[ENA]
¡û
>W1810759503
QPJL01000072
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
2071
1995
-
Met
CAT
[ENA]
¡û
>W1810762334
QPML01000080
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
2073
2149
+
Met
CAT
[ENA]
¡û
>W1810862252
QTUJ01000002
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
864419
864495
+
Met
CAT
[ENA]
¡û
>W1810884858
QUMX01000013
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
83599
83675
+
Met
CAT
[ENA]
¡û
>C11117046
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2855730
2855806
+
Met
CAT
[Ensembl]
¡û
>W1511348621
JRKO01000052
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
29220
29144
-
Met
CAT
[ENA]
¡û
>W1511348631
JRKP01000001
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
56059
55983
-
Met
CAT
[ENA]
¡û
>W1511348688
JRKQ01000022
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
29023
28947
-
Met
CAT
[ENA]
¡û
>W1511348748
JRKR01000082
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
4616
4540
-
Met
CAT
[ENA]
¡û
>W1511348825
JRKT01000022
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
31285
31361
+
Met
CAT
[ENA]
¡û
>W11143045
AEPN01000020
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
36520
36444
-
Met
CAT
[ENA]
¡û
>W121060010
AJFB01001179
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
693
769
+
Met
CAT
[ENA]
¡û
>W1610049831
BBFH01000206
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1974
1898
-
Met
CAT
[ENA]
¡û
>W1610716550
LLWQ01000217
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
21037
20961
-
Met
CAT
[ENA]
¡û
>W1610750134
LNBC01000030
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
108235
108311
+
Met
CAT
[ENA]
¡û
>W1710046230
BBFH01000206
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1974
1898
-
Met
CAT
[ENA]
¡û
>W1710518470
FNEA01000014
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
150974
151050
+
Met
CAT
[ENA]
¡û
>W1710521161
FNGE01000002
Alphaproteobacteria
Paracoccus chinensis [FNGE]
62167
62091
-
Met
CAT
[ENA]
¡û
>W1710528197
FNNA01000001
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
674934
675010
+
Met
CAT
[ENA]
¡û
>W1710563591
FOPU01000023
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
37841
37917
+
Met
CAT
[ENA]
¡û
>W1710571566
FOWA01000019
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
30276
30200
-
Met
CAT
[ENA]
¡û
>W1710574691
FOYK01000014
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
150948
151024
+
Met
CAT
[ENA]
¡û
>W1710581765
FPKI01000010
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
40153
40077
-
Met
CAT
[ENA]
¡û
>W1710596188
FTMK01000007
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
125193
125117
-
Met
CAT
[ENA]
¡û
>W1710599144
FTOM01000005
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
35613
35537
-
Met
CAT
[ENA]
¡û
>W1710608120
FXAQ01000009
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
116593
116517
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK