This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275223 (91 seq.)
>W1711767345
MUZR01000035
Gammaproteobacteria
Thioalkalivibrio halophilus [MUZR]
5062
5137
+
Phe
GAA
[ENA]
¡û
>W1711767857
MVAR01000044
Gammaproteobacteria
Thioalkalivibrio versutus [MVAR]
12432
12357
-
Phe
GAA
[ENA]
¡û
>W131155823
AQOW01000034
Gammaproteobacteria
Thioalkalivibrio sp. HL-Eb18 [AQOW]
5271
5346
+
Phe
GAA
[ENA]
¡û
>W131156020
AQPB01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALE6 [AQPB]
13197
13122
-
Phe
GAA
[ENA]
¡û
>W131161367
AQXP01000053
Gammaproteobacteria
Thioalkalivibrio sp. ALJ11 [AQXP]
54000
54075
+
Phe
GAA
[ENA]
¡û
>W131161405
AQXQ01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALJ7 [AQXQ]
157204
157279
+
Phe
GAA
[ENA]
¡û
>W131161485
AQXS01000009
Gammaproteobacteria
Thioalkalivibrio sp. AKL6 [AQXS]
21640
21565
-
Phe
GAA
[ENA]
¡û
>W131161702
AQXY01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALE14 [AQXY]
63239
63314
+
Phe
GAA
[ENA]
¡û
>W131161882
AQYC01000008
Gammaproteobacteria
Thioalkalivibrio sp. ALMg9 [AQYC]
18766
18691
-
Phe
GAA
[ENA]
¡û
>W131161975
AQYE01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALJ9 [AQYE]
295923
295998
+
Phe
GAA
[ENA]
¡û
>W131161988
AQYF01000001
Gammaproteobacteria
Thioalkalivibrio sp. AKL8 [AQYF]
5181
5256
+
Phe
GAA
[ENA]
¡û
>W131170375
ARFM01000008
Gammaproteobacteria
Thioalkalivibrio versutus AL2 [ARFM]
66013
66088
+
Phe
GAA
[ENA]
¡û
>W131170395
ARFM01000016
Gammaproteobacteria
Thioalkalivibrio versutus AL2 [ARFM]
10588
10513
-
Phe
GAA
[ENA]
¡û
>W131173730
ARHW01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALJ3 [ARHW]
593989
593914
-
Phe
GAA
[ENA]
¡û
>W131173766
ARHX01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALJ4 [ARHX]
295572
295647
+
Phe
GAA
[ENA]
¡û
>W131173816
ARHY01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALJ5 [ARHY]
976471
976396
-
Phe
GAA
[ENA]
¡û
>W131173864
ARHZ01000016
Gammaproteobacteria
Thioalkalivibrio sp. ARh3 [ARHZ]
555252
555177
-
Phe
GAA
[ENA]
¡û
>W131173950
ARIB01000015
Gammaproteobacteria
Thioalkalivibrio sp. ALJ10 [ARIB]
583724
583649
-
Phe
GAA
[ENA]
¡û
>W131173996
ARIC01000062
Gammaproteobacteria
Thioalkalivibrio sp. ALgr3 [ARIC]
229879
229804
-
Phe
GAA
[ENA]
¡û
>W131174085
ARIE01000019
Gammaproteobacteria
Thioalkalivibrio sp. ALJ6 [ARIE]
182947
182872
-
Phe
GAA
[ENA]
¡û
>W131174126
ARIF01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALJ8 [ARIF]
635160
635085
-
Phe
GAA
[ENA]
¡û
>W131175094
ARIZ01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALJ24 [ARIZ]
53546
53471
-
Phe
GAA
[ENA]
¡û
>W131175151
ARJA01000022
Gammaproteobacteria
Thioalkalivibrio sp. AKL3 [ARJA]
83833
83908
+
Phe
GAA
[ENA]
¡û
>W131175185
ARJB01000018
Gammaproteobacteria
Thioalkalivibrio sp. AKL9 [ARJB]
2182
2107
-
Phe
GAA
[ENA]
¡û
>W131175264
ARJC01000024
Gammaproteobacteria
Thioalkalivibrio sp. AKL11 [ARJC]
271739
271814
+
Phe
GAA
[ENA]
¡û
>W131175342
ARJE01000016
Gammaproteobacteria
Thioalkalivibrio sp. AKL17 [ARJE]
141741
141816
+
Phe
GAA
[ENA]
¡û
>W131175412
ARJF01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALMg11 [ARJF]
507977
508052
+
Phe
GAA
[ENA]
¡û
>W131175439
ARJG01000027
Gammaproteobacteria
Thioalkalivibrio sp. AKL12 [ARJG]
137915
137840
-
Phe
GAA
[ENA]
¡û
>W131176335
ARJY01000016
Gammaproteobacteria
Thioalkalivibrio sp. ARh4 [ARJY]
976462
976387
-
Phe
GAA
[ENA]
¡û
>W131176381
ARJZ01000010
Gammaproteobacteria
Thioalkalivibrio sp. ALgr1 [ARJZ]
296183
296258
+
Phe
GAA
[ENA]
¡û
>W131176409
ARKA01000010
Gammaproteobacteria
Thioalkalivibrio sp. ALJ12 [ARKA]
295511
295586
+
Phe
GAA
[ENA]
¡û
>W131176459
ARKB01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALJ2 [ARKB]
27813
27888
+
Phe
GAA
[ENA]
¡û
>W131177031
ARKM01000069
Gammaproteobacteria
Thioalkalivibrio sp. ALE23 [ARKM]
66517
66442
-
Phe
GAA
[ENA]
¡û
>W131177056
ARKN01000003
Gammaproteobacteria
Thioalkalivibrio sp. AL5 [ARKN]
976423
976348
-
Phe
GAA
[ENA]
¡û
>W131177092
ARKO01000001
Gammaproteobacteria
Thioalkalivibrio sp. ALJ20 [ARKO]
299648
299723
+
Phe
GAA
[ENA]
¡û
>W131177192
ARKP01000003
Gammaproteobacteria
Thioalkalivibrio sp. ALJ21 [ARKP]
581157
581082
-
Phe
GAA
[ENA]
¡û
>W131178146
ARLI01000051
Gammaproteobacteria
Thioalkalivibrio sp. ALMg2 [ARLI]
42065
41990
-
Phe
GAA
[ENA]
¡û
>W131178251
ARLK01000064
Gammaproteobacteria
Thioalkalivibrio sp. ALMg13-2 [ARLK]
5045
5120
+
Phe
GAA
[ENA]
¡û
>W131178269
ARLL01000048
Gammaproteobacteria
Thioalkalivibrio sp. ALE11 [ARLL]
7018
6943
-
Phe
GAA
[ENA]
¡û
>W131178305
ARLM01000007
Gammaproteobacteria
Thioalkalivibrio sp. ALMg3 [ARLM]
21781
21706
-
Phe
GAA
[ENA]
¡û
>W131178350
ARLN01000004
Gammaproteobacteria
Thioalkalivibrio sp. ALD1 [ARLN]
179533
179608
+
Phe
GAA
[ENA]
¡û
>W131178583
ARLR01000004
Gammaproteobacteria
Thioalkalivibrio sp. AL21 [ARLR]
299648
299723
+
Phe
GAA
[ENA]
¡û
>W131178693
ARLT01000019
Gammaproteobacteria
Thioalkalivibrio sp. ALE10 [ARLT]
20999
20924
-
Phe
GAA
[ENA]
¡û
>W131178724
ARLU01000021
Gammaproteobacteria
Thioalkalivibrio sp. ALE20 [ARLU]
50349
50274
-
Phe
GAA
[ENA]
¡û
>W131178802
ARLV01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALRh [ARLV]
610422
610347
-
Phe
GAA
[ENA]
¡û
>W131178869
ARLX01000021
Gammaproteobacteria
Thioalkalivibrio sp. ALE18 [ARLX]
260231
260306
+
Phe
GAA
[ENA]
¡û
>W131178947
ARLZ01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALM2T [ARLZ]
15140
15065
-
Phe
GAA
[ENA]
¡û
>W131179410
ARMJ01000006
Gammaproteobacteria
Thioalkalivibrio sp. AKL7 [ARMJ]
5638
5563
-
Phe
GAA
[ENA]
¡û
>W131179658
ARMO01000012
Gammaproteobacteria
Thioalkalivibrio sp. ARh5 [ARMO]
379779
379704
-
Phe
GAA
[ENA]
¡û
>W131179759
ARMQ01000010
Gammaproteobacteria
Thioalkalivibrio sp. AKL10 [ARMQ]
707885
707810
-
Phe
GAA
[ENA]
¡û
>W131180041
ARMV01000028
Gammaproteobacteria
Thioalkalivibrio sp. ALSr1 [ARMV]
595748
595823
+
Phe
GAA
[ENA]
¡û
>W131180910
ARNM01000048
Gammaproteobacteria
Solimonas variicoloris DSM 15731 [ARNM]
201459
201384
-
Phe
GAA
[ENA]
¡û
>W131182503
ARQK01000059
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh2 [ARQK]
73558
73483
-
Phe
GAA
[ENA]
¡û
>W131185604
ARTU01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALJ15 [ARTU]
599822
599747
-
Phe
GAA
[ENA]
¡û
>W131214722
ATUK01000014
Gammaproteobacteria
Thioalkalivibrio sp. AKL19 [ATUK]
302654
302579
-
Phe
GAA
[ENA]
¡û
>W131214763
ATUL01000016
Gammaproteobacteria
Thioalkalivibrio sp. ALR17-21 [ATUL]
6365
6440
+
Phe
GAA
[ENA]
¡û
>W131221223
AUAG01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALE19 [AUAG]
12394
12319
-
Phe
GAA
[ENA]
¡û
>W131228339
AUFV01000026
Gammaproteobacteria
Solimonas flava DSM 18980 [AUFV]
12424
12499
+
Phe
GAA
[ENA]
¡û
>C010518
CP000544
Gammaproteobacteria
Halorhodospira halophila SL1 [CP000544]
1242463
1242538
+
Phe
GAA
[Ensembl]
¡û
>WENV180018699
FTAG01001997
[FTAG] metagenome; soil
69
144
+
Phe
GAA
[ENA]
¡û
>W141154028
AXDW01000017
Gammaproteobacteria
Solimonas soli DSM 21787 [AXDW]
96643
96568
-
Phe
GAA
[ENA]
¡û
>WENV170003301
AGTN01292279
[AGTN] bioreactor metagenome; poplar biomass
165
90
-
Phe
GAA
[ENA]
¡û
>WENV170680305
LFCJ01007611
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2163
2088
-
Phe
GAA
[ENA]
¡û
>WENV170681781
LFFM01002687
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4039
4114
+
Phe
GAA
[ENA]
¡û
>WENV170682644
LFIK01000695
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
23576
23651
+
Phe
GAA
[ENA]
¡û
>WENV170702243
LKMJ01001001
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
18320
18245
-
Phe
GAA
[ENA]
¡û
>WENV170702533
LKMJ01002372
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
756
681
-
Phe
GAA
[ENA]
¡û
>WENV170996406
MWWF01255035
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
128
53
-
Phe
GAA
[ENA]
¡û
>C181001687
AP017372
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [AP017372]
55651
55576
-
Phe
GAA
-
¡û
>C191078894
CP031704
Gammaproteobacteria
Solimonas sp. K1W22B-7 [CP031704]
4707813
4707888
+
Phe
GAA
-
¡û
>W09105213
AAOQ01000002
Gammaproteobacteria
Halorhodospira halophila SL1 [AAOQ]
80776
80851
+
Phe
GAA
[ENA]
¡û
>W09125855
ACIU01000001
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [ACIU] K90mix [ACIU]
79505
79430
-
Phe
GAA
[ENA]
¡û
>W141779245
JONR01000012
Gammaproteobacteria
Nevskia soli DSM 19509 [JONR]
28491
28566
+
Phe
GAA
[ENA]
¡û
>W141815539
JQIW01000001
Gammaproteobacteria
Thioalkalivibrio sp. ALJ1 [JQIW]
887008
887083
+
Phe
GAA
[ENA]
¡û
>W1910821887
MWIN01000014
Gammaproteobacteria
Panacagrimonas perspica DSM 26377 [MWIN]
160024
159949
-
Phe
GAA
[ENA]
¡û
>W1810273214
PSNW01000005
Gammaproteobacteria
Solimonas fluminis HR-BB [PSNW]
307586
307661
+
Phe
GAA
[ENA]
¡û
>W1810676466
QKMA01000003
Gammaproteobacteria
Thioalkalivibrio sp. ALE21 [QKMA]
284395
284320
-
Phe
GAA
[ENA]
¡û
>C151081576
CP011367
Gammaproteobacteria
Thioalkalivibrio versutus D301 [CP011367]
29181
29256
+
Phe
GAA
[Ensembl]
¡û
>W2010514893
JAAMOW010000010
Gammaproteobacteria
Solimonas terrae KIS83-12 [JAAMOW]
32234
32159
-
Phe
GAA
[ENA]
¡û
>W2010576626
JAAVXB010000016
Gammaproteobacteria
Solimonas sp. C16B3 [JAAVXB]
27321
27246
-
Phe
GAA
[ENA]
¡û
>W2010918175
MWIN01000014
Gammaproteobacteria
Panacagrimonas perspica DSM 26377 [MWIN]
160024
159949
-
Phe
GAA
[ENA]
¡û
>W2011443529
RJVO01000002
Gammaproteobacteria
Sinobacteraceae bacterium THS-13 [RJVO]
460271
460196
-
Phe
GAA
[ENA]
¡û
>W2011655406
SOBT01000008
Gammaproteobacteria
Panacagrimonas perspica DSM 26377 [SOBT]
762174
762099
-
Phe
GAA
[ENA]
¡û
>W2011695805
SUKF01000002
Gammaproteobacteria
Sinimarinibacterium sp. CAU 1509 [SUKF]
482521
482596
+
Phe
GAA
[ENA]
¡û
>W2110751891
NHSE01000009
Gammaproteobacteria
Halorhodospira halophila IM9620 [NHSE]
935
860
-
Phe
GAA
[ENA]
¡û
>W2110752291
NHSN01000017
Gammaproteobacteria
Halorhodospira halophila IM9626 [NHSN]
145567
145642
+
Phe
GAA
[ENA]
¡û
>W2110753376
NRRM01000001
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [NRRM]
176062
176137
+
Phe
GAA
[ENA]
¡û
>W2110753420
NRRN01000001
Gammaproteobacteria
Halorhodospira abdelmalekii DSM 2110 [NRRN]
93830
93905
+
Phe
GAA
[ENA]
¡û
>W2110753495
NRRO01000012
Gammaproteobacteria
Halorhodospira halophila IM 9630 [NRRO]
79178
79103
-
Phe
GAA
[ENA]
¡û
>C10113306
CP001905
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [CP001905]
2608826
2608901
+
Phe
GAA
[Ensembl]
¡û
>W1710550972
FOFS01000007
Gammaproteobacteria
Solimonas aquatica [FOFS]
112897
112822
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK