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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275624 (19 seq.)
>W1711377584
MDZB01000073
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
48532
48606
+
Pro
CGG
[ENA]
¡û
>W1711726889
MTSE01000025
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
44047
43973
-
Pro
CGG
[ENA]
¡û
>C181175104
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
3319244
3319170
-
Pro
CGG
-
¡û
>C191154906
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
81526
81452
-
Pro
CGG
-
¡û
>C191183791
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
1924754
1924828
+
Pro
CGG
-
¡û
>W141734707
JNLX01000083
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
18192
18266
+
Pro
CGG
[ENA]
¡û
>W1910547414
FZNS01000006
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
6802
6728
-
Pro
CGG
[ENA]
¡û
>SRA1003894
SRR002328.15992
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
10
86
+
Pro
CGG
[SRA]
>SRA1004255
SRR002328.226211
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
30
106
+
Pro
CGG
[SRA]
>C151017368
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4689694
4689768
+
Pro
CGG
[Ensembl]
¡û
>C151064016
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
495410
495336
-
Pro
CGG
[Ensembl]
¡û
>C151096209
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
3226785
3226859
+
Pro
CGG
-
¡û
>W1511543322
JZIR01000074
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
6670
6596
-
Pro
CGG
[ENA]
¡û
>W1511582940
LATM01000004
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
253818
253744
-
Pro
CGG
[ENA]
¡û
>C161061572
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
985632
985554
-
Pro
CGG
[Ensembl]
¡û
>C161070730
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
4724855
4724778
-
Pro
CGG
[Ensembl]
¡û
>W1710573729
FOXS01000002
Bacteroidota
Hymenobacter arizonensis [FOXS]
638407
638481
+
Pro
CGG
[ENA]
¡û
>W1710590093
FRAS01000001
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
484202
484276
+
Pro
CGG
[ENA]
¡û
>W1710610185
FYEW01000003
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
11694
11620
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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