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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275625 (20 seq.)
>W131180748
ARNJ01000048
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
15577
15502
-
His
GTG
[ENA]
¡û
>W131215989
ATVL01000010
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
587734
587808
+
His
GTG
[ENA]
¡û
>W1712105591
NIRR01000041
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
14110
14184
+
His
GTG
[ENA]
¡û
>WENV170991360
MWWA01176251
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
120
195
+
His
GTG
[ENA]
¢þ
>W1910651899
LYMU01000091
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
631643
631717
+
His
GTG
[ENA]
¡û
>W1911788152
QYCN01000013
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
95187
95264
+
His
GTG
[ENA]
¡û
>W1810912380
QVLT01000012
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
16675
16601
-
His
GTG
[ENA]
¡û
>SRA1016451
SRR023846.503935
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
86
160
+
His
GTG
[SRA]
>C151009411
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2566870
2566945
+
His
GTG
[Ensembl]
¡û
>C151017349
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
487599
487674
+
His
GTG
[Ensembl]
¡û
>C151063978
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
954375
954451
+
His
GTG
[Ensembl]
¡û
>C151096215
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
2815707
2815631
-
His
GTG
-
¡û
>W1511582959
LATM01000021
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
62452
62527
+
His
GTG
[ENA]
¡û
>C161061577
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
402386
402311
-
His
GTG
[Ensembl]
¡û
>W1710530576
FNOV01000018
Bacteroidota
Hymenobacter psychrophilus [FNOV]
43298
43373
+
His
GTG
[ENA]
¡û
>W1710553591
FOHS01000007
Bacteroidota
Hymenobacter actinosclerus [FOHS]
15380
15305
-
His
GTG
[ENA]
¡û
>W1710573734
FOXS01000002
Bacteroidota
Hymenobacter arizonensis [FOXS]
1254608
1254683
+
His
GTG
[ENA]
¡û
>W1710587453
FQYN01000001
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
14884
14810
-
His
GTG
[ENA]
¡û
>W1710590095
FRAS01000002
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
1842
1916
+
His
GTG
[ENA]
¡û
>W1710610180
FYEW01000003
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
448195
448270
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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