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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275629 (37 seq.)
>W131180766
ARNJ01000062
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
148553
148477
-
Asn
GTT
[ENA]
¡û
>W131215991
ATVL01000010
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
176019
175943
-
Asn
GTT
[ENA]
¡û
>W1711377542
MDZA01000044
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
5401
5477
+
Asn
GTT
[ENA]
¡û
>W1711377596
MDZB01000098
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
36436
36512
+
Asn
GTT
[ENA]
¡û
>W1711377635
MDZC01000050
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
10756
10680
-
Asn
GTT
[ENA]
¡û
>W1711726856
MTSE01000001
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
329105
329181
+
Asn
GTT
[ENA]
¡û
>WENV170988850
MWVY01015376
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
189
113
-
Asn
GTT
[ENA]
¢þ
>WENV170988936
MWVY01034796
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
492
418
-
Asn
GTT
[ENA]
¢þ
>WENV170997270
MWWG01071278
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
309
235
-
Asn
GTT
[ENA]
¢þ
>C181175088
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
3726242
3726316
+
Asn
GTT
-
¡û
>C191154903
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
332903
332827
-
Asn
GTT
-
¡û
>C191183817
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
2441599
2441525
-
Asn
GTT
-
¡û
>W141734733
JNLX01000184
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
18073
18149
+
Asn
GTT
[ENA]
¡û
>W1910547397
FZNS01000003
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
480941
480865
-
Asn
GTT
[ENA]
¡û
>W1910651914
LYMU01000129
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
113125
113199
+
Asn
GTT
[ENA]
¡û
>W1911788144
QYCN01000005
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
128498
128422
-
Asn
GTT
[ENA]
¡û
>W1810089899
PGFA01000003
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
534182
534106
-
Asn
GTT
[ENA]
¡û
>W1810625885
QHKM01000002
Bacteroidota
Hymenobacter edaphi NL [QHKM]
207176
207250
+
Asn
GTT
[ENA]
¡û
>W1810678959
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
473776
473700
-
Asn
GTT
[ENA]
¡û
>W1810912366
QVLT01000002
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
164300
164224
-
Asn
GTT
[ENA]
¡û
>SRA1014993
SRR023845.416425
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
141
-
Asn
GTT
[SRA]
>SRA1015527
SRR023846.98259
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
132
206
+
Asn
GTT
[SRA]
>C151009434
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2317025
2316951
-
Asn
GTT
[Ensembl]
¡û
>C151017363
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4437932
4438008
+
Asn
GTT
[Ensembl]
¡û
>C151063977
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
114418
114494
+
Asn
GTT
[Ensembl]
¡û
>C151096214
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
3617574
3617498
-
Asn
GTT
-
¡û
>W1511543323
JZIR01000078
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
3956
4032
+
Asn
GTT
[ENA]
¡û
>W1511582949
LATM01000012
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
45316
45240
-
Asn
GTT
[ENA]
¡û
>C161061543
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
1828060
1828136
+
Asn
GTT
[Ensembl]
¡û
>C161070708
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
117133
117209
+
Asn
GTT
[Ensembl]
¡û
>C161077122
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
3445115
3445039
-
Asn
GTT
[Ensembl]
¡û
>W1710553589
FOHS01000004
Bacteroidota
Hymenobacter actinosclerus [FOHS]
186266
186190
-
Asn
GTT
[ENA]
¡û
>W1710573746
FOXS01000005
Bacteroidota
Hymenobacter arizonensis [FOXS]
42909
42985
+
Asn
GTT
[ENA]
¡û
>W1710587478
FQYN01000006
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
279909
279833
-
Asn
GTT
[ENA]
¡û
>W1710590115
FRAS01000014
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
72720
72646
-
Asn
GTT
[ENA]
¡û
>W1710605412
FWWW01000067
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
56372
56296
-
Asn
GTT
[ENA]
¡û
>W1710610170
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
1058768
1058844
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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