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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275629 (7 seq.)
>W1712050142
NFVD01000459
Betaproteobacteria
Paraburkholderia hospita terrae [NFVD]
40825
40902
+
Gln
TTG
[ENA]
¡û
>C181127981
CP026106
Betaproteobacteria
Paraburkholderia hospita DSM 17164 [CP026105, CP026106, CP026107, CP026108, CP026109]
1101565
1101642
+
Gln
TTG
-
¡û
>W2011555554
SELS01000017
Betaproteobacteria
Paraburkholderia sp. UYCPa14C [SELS]
136083
136006
-
Gln
TTG
[ENA]
¡û
>W2110109439
CAJHCP010000010
Betaproteobacteria
Paraburkholderia metrosideri LMG 28140 [CAJHCP]
52396
52319
-
Gln
TTG
[ENA]
¡û
>W121075399
AKAU01000213
Betaproteobacteria
Paraburkholderia hospita BS001 [AKAU]
55587
55510
-
Gln
TTG
[ENA]
¡û
>W1710526876
FNKP01000003
Betaproteobacteria
Paraburkholderia fungorum [FNKP]
370423
370500
+
Gln
TTG
[ENA]
¡û
>W1710540733
FNXA01000077
Betaproteobacteria
Paraburkholderia hospita [FNXA]
485
408
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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