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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275634 (31 seq.)
>W1711377552
MDZA01000205
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
215
289
+
Ile
GAT
[ENA]
¡û
>W1712105595
NIRR01000106
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
195
269
+
Ile
GAT
[ENA]
¡û
>WENV181304840
OFID01001332
[OFID] marine metagenome; sea ice
276
350
+
Ile
GAT
[ENA]
¢þ
>W141151931
AXBK01000007
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
208680
208606
-
Ile
GAT
[ENA]
¡û
>WENV170988746
MWVY01002185
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
431
507
+
Ile
GAT
[ENA]
¢þ
>WENV170988996
MWVY01051309
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
363
437
+
Ile
GAT
[ENA]
¢þ
>WENV170995148
MWWE01184771
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
257
331
+
Ile
GAT
[ENA]
¢þ
>C181175112
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
2138132
2138058
-
Ile
GAT
-
¡û
>W141734713
JNLX01000104
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
1659
1733
+
Ile
GAT
[ENA]
¡û
>W1910651908
LYMU01000123
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
194
120
-
Ile
GAT
[ENA]
¡û
>W1910651909
LYMU01000124
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
317
243
-
Ile
GAT
[ENA]
¡û
>W1911788171
QYCN01000074
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
2394
2468
+
Ile
GAT
[ENA]
¡û
>W1810400070
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
3381680
3381606
-
Ile
GAT
[ENA]
¡û
>W1810400079
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
2178264
2178190
-
Ile
GAT
[ENA]
¡û
>W1810483258
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
439929
440003
+
Ile
GAT
[ENA]
¡û
>W1810483262
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
1832192
1832266
+
Ile
GAT
[ENA]
¡û
>W1810483272
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
4557173
4557099
-
Ile
GAT
[ENA]
¡û
>W1810678989
QKNS01000028
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
225
299
+
Ile
GAT
[ENA]
¡û
>W1810912403
QVLT01000073
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
411
337
-
Ile
GAT
[ENA]
¡û
>SRA1015361
SRR023846.30183
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
141
-
Ile
GAT
[SRA]
>SRA1016359
SRR023846.464443
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
253
+
Ile
GAT
[SRA]
>C151063979
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
969261
969335
+
Ile
GAT
[Ensembl]
¡û
>C151064004
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3067005
3066931
-
Ile
GAT
[Ensembl]
¡û
>C151096197
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
761544
761618
+
Ile
GAT
-
¡û
>C151096216
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
2800815
2800741
-
Ile
GAT
-
¡û
>W1511543332
JZIR01000134
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
309
235
-
Ile
GAT
[ENA]
¡û
>C161061540
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
1391822
1391896
+
Ile
GAT
[Ensembl]
¡û
>C161070738
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
3416212
3416138
-
Ile
GAT
[Ensembl]
¡û
>C161077116
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
4596714
4596788
+
Ile
GAT
[Ensembl]
¡û
>C161077129
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
2007686
2007612
-
Ile
GAT
[Ensembl]
¡û
>W1710590130
FRAS01000056
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
1377
1451
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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