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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275923 (71 seq.)
>W1710870860
LMKV01000033
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
36512
36436
-
Arg
ACG
[ENA]
¡û
>W1710870861
LMKV01000033
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
36380
36304
-
Arg
ACG
[ENA]
¡û
>W1711081076
LSRO01000075
Alphaproteobacteria
Rhizobium sp. 58 [LSRO]
155134
155058
-
Arg
ACG
[ENA]
¡û
>W1711081152
LSRP01000140
Alphaproteobacteria
Pararhizobium antarcticum 59 [LSRP]
18707
18631
-
Arg
ACG
[ENA]
¡û
>W1711082196
LSTR01000040
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
135895
135819
-
Arg
ACG
[ENA]
¡û
>W1711082197
LSTR01000040
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
135136
135060
-
Arg
ACG
[ENA]
¡û
>W1711083832
LSVG01000004
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
49439
49515
+
Arg
ACG
[ENA]
¡û
>W1711083833
LSVG01000004
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
50198
50274
+
Arg
ACG
[ENA]
¡û
>W1711146765
LVJD01000135
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
31171
31247
+
Arg
ACG
[ENA]
¡û
>W131002970
AGZU01000004
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
158789
158713
-
Arg
ACG
[ENA]
¡û
>W131002971
AGZU01000004
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
158031
157955
-
Arg
ACG
[ENA]
¡û
>W131052360
AMYX01000006
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
58688
58764
+
Arg
ACG
[ENA]
¡û
>W131052361
AMYX01000006
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
59447
59523
+
Arg
ACG
[ENA]
¡û
>W131222146
AUBA01000018
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
61201
61277
+
Arg
ACG
[ENA]
¡û
>W131222147
AUBA01000018
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
61345
61421
+
Arg
ACG
[ENA]
¡û
>WENV183729757
PJTR01000056
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
134893
134817
-
Arg
ACG
[ENA]
¢þ
>WENV183729758
PJTR01000056
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
134137
134061
-
Arg
ACG
[ENA]
¢þ
>WENV183730448
PJTS01000024
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
134893
134817
-
Arg
ACG
[ENA]
¢þ
>WENV183730449
PJTS01000024
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
134137
134061
-
Arg
ACG
[ENA]
¢þ
>WENV183732487
PJTX01000988
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
838
762
-
Arg
ACG
[ENA]
¢þ
>WENV183732488
PJTX01000988
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
79
3
-
Arg
ACG
[ENA]
¢þ
>WENV183733041
PJTY01000028
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
33379
33455
+
Arg
ACG
[ENA]
¢þ
>WENV183733042
PJTY01000028
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
34138
34214
+
Arg
ACG
[ENA]
¢þ
>WENV183734269
PJTZ01000691
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
6507
6431
-
Arg
ACG
[ENA]
¢þ
>WENV183734270
PJTZ01000691
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
5748
5672
-
Arg
ACG
[ENA]
¢þ
>WENV183736990
PJUD01000185
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
33379
33455
+
Arg
ACG
[ENA]
¢þ
>WENV183736991
PJUD01000185
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
34138
34214
+
Arg
ACG
[ENA]
¢þ
>C181047605
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
3407259
3407183
-
Arg
ACG
-
¡û
>C181047606
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
3406500
3406424
-
Arg
ACG
-
¡û
>C181089712
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
2011180
2011104
-
Arg
ACG
-
¡û
>C181089713
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
2010421
2010345
-
Arg
ACG
-
¡û
>C191002732
AP018518
Alphaproteobacteria
Sphingobium sp. YG1 [AP018518, AP018519]
1099754
1099830
+
Arg
ACG
-
¡û
>C191002733
AP018518
Alphaproteobacteria
Sphingobium sp. YG1 [AP018518, AP018519]
1099886
1099962
+
Arg
ACG
-
¡û
>W141520454
JGVR01000015
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
106790
106714
-
Arg
ACG
[ENA]
¡û
>W141520455
JGVR01000015
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
106031
105955
-
Arg
ACG
[ENA]
¡û
>C191063660
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
1535547
1535471
-
Arg
ACG
-
¡û
>C191063661
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
1534788
1534712
-
Arg
ACG
-
¡û
>C191103867
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
910332
910408
+
Arg
ACG
-
¡û
>C191103868
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
911091
911167
+
Arg
ACG
-
¡û
>C191163705
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
3243043
3242967
-
Arg
ACG
-
¡û
>C191163706
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
3242284
3242208
-
Arg
ACG
-
¡û
>WENV023906
AACY020764069
Marine microbial communities from Global Ocean Sampling (GOS)
154
230
+
Arg
ACG
[ENA]
>W141807730
JPOU01000004
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
59436
59512
+
Arg
ACG
[ENA]
¡û
>W141807731
JPOU01000004
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
60195
60271
+
Arg
ACG
[ENA]
¡û
>W141815995
JQJO01000001
Alphaproteobacteria
Rhizobium sp. OK665 [JQJO]
470806
470882
+
Arg
ACG
[ENA]
¡û
>W1911114834
NOIW01000072
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
21559
21635
+
Arg
ACG
[ENA]
¡û
>W1911114835
NOIW01000072
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
22317
22393
+
Arg
ACG
[ENA]
¡û
>W1911688285
QLJK01000006
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
50252
50328
+
Arg
ACG
[ENA]
¡û
>W1911688286
QLJK01000006
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
51010
51086
+
Arg
ACG
[ENA]
¡û
>W1911722421
QRAL01000004
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
146859
146783
-
Arg
ACG
[ENA]
¡û
>W1911722422
QRAL01000004
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
146102
146026
-
Arg
ACG
[ENA]
¡û
>W1810677115
QKMM01000001
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
407443
407367
-
Arg
ACG
[ENA]
¡û
>W1810677116
QKMM01000001
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
407313
407237
-
Arg
ACG
[ENA]
¡û
>W1510941322
JFFT01000005
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
164677
164601
-
Arg
ACG
[ENA]
¡û
>W1510941323
JFFT01000005
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
163918
163842
-
Arg
ACG
[ENA]
¡û
>W11176440
AFXE01000101
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
146338
146414
+
Arg
ACG
[ENA]
¡û
>W11176441
AFXE01000101
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
147096
147172
+
Arg
ACG
[ENA]
¡û
>W121068953
AJVL01000053
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
13668
13744
+
Arg
ACG
[ENA]
¡û
>W121068954
AJVL01000053
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
14184
14260
+
Arg
ACG
[ENA]
¡û
>W1610076550
BCYV01000005
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
382518
382594
+
Arg
ACG
[ENA]
¡û
>W1610733206
LMKV01000033
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
36512
36436
-
Arg
ACG
[ENA]
¡û
>W1610733207
LMKV01000033
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
36380
36304
-
Arg
ACG
[ENA]
¡û
>W1610920981
LSTR01000040
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
135895
135819
-
Arg
ACG
[ENA]
¡û
>W1610920982
LSTR01000040
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
135136
135060
-
Arg
ACG
[ENA]
¡û
>W1610922585
LSVG01000004
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
49439
49515
+
Arg
ACG
[ENA]
¡û
>W1610922586
LSVG01000004
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
50198
50274
+
Arg
ACG
[ENA]
¡û
>W1710074239
BCYV01000005
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
382518
382594
+
Arg
ACG
[ENA]
¡û
>W1710542223
FNYZ01000006
Alphaproteobacteria
Sphingobium sp. AP50 [FNYZ]
88147
88071
-
Arg
ACG
[ENA]
¡û
>W1710542225
FNYZ01000006
Alphaproteobacteria
Sphingobium sp. AP50 [FNYZ]
87885
87809
-
Arg
ACG
[ENA]
¡û
>W1710592164
FRCG01000007
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
158019
158095
+
Arg
ACG
[ENA]
¡û
>W1710592165
FRCG01000007
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
158777
158853
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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