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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275937 (124 seq.)
>W1710786957
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3775801
3775725
-
Ile
GAT
[ENA]
¡û
>W1710859946
LMCM01000007
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
371105
371181
+
Ile
GAT
[ENA]
¡û
>W1710860265
LMCT01000003
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
59565
59641
+
Ile
GAT
[ENA]
¡û
>W1710865198
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
2403250
2403174
-
Ile
GAT
[ENA]
¡û
>W1710866973
LMHX01000031
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
57981
58057
+
Ile
GAT
[ENA]
¡û
>W1710880062
LMSC01000006
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
51285
51361
+
Ile
GAT
[ENA]
¡û
>W1710880201
LMSE01000001
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
258487
258411
-
Ile
GAT
[ENA]
¡û
>W1710880971
LMSS01000002
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
97584
97508
-
Ile
GAT
[ENA]
¡û
>W1710881003
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
197637
197713
+
Ile
GAT
[ENA]
¡û
>W1711183452
LWLA01000049
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
253068
253144
+
Ile
GAT
[ENA]
¡û
>W1711627069
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
3568489
3568413
-
Ile
GAT
[ENA]
¡û
>W1711796396
MWQN01000001
Actinomycetota
Embleya scabrispora scabrisporus [MWQN]
3344614
3344688
+
Ile
GAT
[ENA]
¡û
>W131166296
ARCJ01000011
Actinomycetota
Embleya scabrispora DSM 41855 [ARCJ]
161985
161911
-
Ile
GAT
[ENA]
¡û
>W131224340
AUCS01000004
Actinomycetota
Dermatophilus congolensis DSM 44180 = NBRC 105199 [AUCS]
40242
40318
+
Ile
GAT
[ENA]
¡û
>C171109530
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
2640516
2640440
-
Ile
GAT
-
¡û
>C171109531
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
2640350
2640274
-
Ile
GAT
-
¡û
>WENV180023329
FTHV01000258
[FTHV] metagenome; soil
2719
2644
-
Ile
GAT
[ENA]
¢þ
>WENV180023459
FTHY01000255
[FTHY] metagenome; soil
2719
2644
-
Ile
GAT
[ENA]
¢þ
>WENV180024705
FTIJ01000321
[FTIJ] metagenome; soil
3603
3678
+
Ile
GAT
[ENA]
¢þ
>WENV180033178
FTKF01013737
[FTKF] metagenome; soil
2290
2365
+
Ile
GAT
[ENA]
¢þ
>WENV180033282
FTKF01264899
[FTKF] metagenome; soil
51
126
+
Ile
GAT
[ENA]
¢þ
>WENV180033578
FTKL01000189
[FTKL] metagenome; soil
11726
11651
-
Ile
GAT
[ENA]
¢þ
>WENV180033643
FTKL01001019
[FTKL] metagenome; soil
24685
24760
+
Ile
GAT
[ENA]
¢þ
>WENV180035037
FTKT01000343
[FTKT] metagenome; soil
58981
58906
-
Ile
GAT
[ENA]
¢þ
>WENV180284369
OBID01035582
[OBID] metagenome; sludge
488
562
+
Ile
GAT
[ENA]
¢þ
>WENV180690393
OCZS010004836
[OCZS] soil metagenome; soil
3243
3319
+
Ile
GAT
[ENA]
¢þ
>WENV181188150
OEOE01033935
[OEOE] activated sludge metagenome; Activated Sludge
464
390
-
Ile
GAT
[ENA]
¢þ
>WENV181189375
OEOF01031961
[OEOF] activated sludge metagenome; Activated Sludge
495
421
-
Ile
GAT
[ENA]
¢þ
>WENV181192629
OEPS010849378
[OEPS] soil metagenome; soil
128
204
+
Ile
GAT
[ENA]
¢þ
>WENV181372007
OFQW01007303
[OFQW] wastewater metagenome; Exp Tend NO 90WW
1104
1030
-
Ile
GAT
[ENA]
¢þ
>W141242896
CAIZ01000030
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
447
371
-
Ile
GAT
[ENA]
¡û
>W141242902
CAIZ01000059
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
652
728
+
Ile
GAT
[ENA]
¡û
>W141243053
CAJC01000166
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
14327
14403
+
Ile
GAT
[ENA]
¡û
>W141282773
JAIZ01000499
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
4500
4424
-
Ile
GAT
[ENA]
¡û
>WENV183705146
PDWI01001135
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12011
12087
+
Ile
GAT
[ENA]
¢þ
>WENV183719161
PDWJ01010298
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
376
452
+
Ile
GAT
[ENA]
¢þ
>WENV183721337
PDWJ01064970
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1465
1541
+
Ile
GAT
[ENA]
¢þ
>WENV170551237
CXWJ01001851
[CXWJ] wastewater metagenome; activated sludge
537
461
-
Ile
GAT
[ENA]
¢þ
>WENV170565605
FJVZ01000948
[FJVZ] metagenome; soil
9104
9028
-
Ile
GAT
[ENA]
¢þ
>WENV170975227
MTKY01097899
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
19869
19793
-
Ile
GAT
[ENA]
¢þ
>WENV170979522
MTKZ01095213
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3604
3680
+
Ile
GAT
[ENA]
¢þ
>WENV170979749
MTKZ01105537
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
618
542
-
Ile
GAT
[ENA]
¢þ
>C181116292
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
4424995
4425070
+
Ile
GAT
-
¡û
>C181200501
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
11818
11896
+
Ile
GAT
-
¡û
>C181225171
LT906453
Actinomycetota
Dermatophilus congolensis NCTC13039 [LT906453]
487374
487300
-
Ile
GAT
-
¡û
>W141726632
JNBY01000093
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
228920
228996
+
Ile
GAT
[ENA]
¡û
>W141755559
JNWQ01000049
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
358
282
-
Ile
GAT
[ENA]
¡û
>W141755560
JNWQ01000049
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
196
120
-
Ile
GAT
[ENA]
¡û
>W141755610
JNWR01000001
Actinomycetota
Kitasatospora aureofaciens [JNWR]
30087
30011
-
Ile
GAT
[ENA]
¡û
>W141755611
JNWR01000001
Actinomycetota
Kitasatospora aureofaciens [JNWR]
29921
29845
-
Ile
GAT
[ENA]
¡û
>W141756043
JNWY01000002
Actinomycetota
Kitasatospora setae [JNWY]
161497
161421
-
Ile
GAT
[ENA]
¡û
>W141756132
JNWZ01000015
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
34496
34420
-
Ile
GAT
[ENA]
¡û
>W141757847
JNYE01000050
Actinomycetota
Kitasatospora phosalacinea [JNYE]
75522
75598
+
Ile
GAT
[ENA]
¡û
>W141761790
JOAY01000042
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
358
282
-
Ile
GAT
[ENA]
¡û
>W141761791
JOAY01000042
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
196
120
-
Ile
GAT
[ENA]
¡û
>W141763686
JOCF01000011
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
101511
101587
+
Ile
GAT
[ENA]
¡û
>W141763687
JOCF01000011
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
101715
101791
+
Ile
GAT
[ENA]
¡û
>W141766737
JOEE01000002
Actinomycetota
Phycicoccus jejuensis [JOEE]
450257
450181
-
Ile
GAT
[ENA]
¡û
>W141767510
JOER01000011
Actinomycetota
Kitasatospora aureofaciens [JOER]
265143
265219
+
Ile
GAT
[ENA]
¡û
>W141767511
JOER01000011
Actinomycetota
Kitasatospora aureofaciens [JOER]
265309
265385
+
Ile
GAT
[ENA]
¡û
>W141768739
JOFK01000009
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
29952
29876
-
Ile
GAT
[ENA]
¡û
>W141768740
JOFK01000009
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
29786
29710
-
Ile
GAT
[ENA]
¡û
>W141770074
JOGG01000001
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
111438
111362
-
Ile
GAT
[ENA]
¡û
>W141770075
JOGG01000001
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
111272
111196
-
Ile
GAT
[ENA]
¡û
>W141770137
JOGH01000002
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
229849
229925
+
Ile
GAT
[ENA]
¡û
>W141771630
JOHH01000262
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
69
145
+
Ile
GAT
[ENA]
¡û
>W141771907
JOHM01002021
Actinomycetota
Streptomyces sp. NRRL F-6133 [JOHM]
751
827
+
Ile
GAT
[ENA]
¡û
>W141772004
JOHO01000004
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
234153
234229
+
Ile
GAT
[ENA]
¡û
>W141772005
JOHO01000004
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
234315
234391
+
Ile
GAT
[ENA]
¡û
>W141774337
JOJA01000002
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
226729
226805
+
Ile
GAT
[ENA]
¡û
>W141818502
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
1406731
1406655
-
Ile
GAT
[ENA]
¡û
>W141819636
JQMJ01000003
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
412294
412218
-
Ile
GAT
[ENA]
¡û
>W141820001
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
2642575
2642499
-
Ile
GAT
[ENA]
¡û
>W141820100
JQMQ01000005
Actinomycetota
Phaeacidiphilus oryzae TH49 [JQMQ]
3555376
3555300
-
Ile
GAT
[ENA]
¡û
>W1910141291
BIFH01000027
Actinomycetota
Embleya hyalina NBRC 13850 [BIFH]
168709
168635
-
Ile
GAT
[ENA]
¡û
>W1911083749
NNBO01000019
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
108126
108051
-
Ile
GAT
[ENA]
¡û
>W1911494843
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
3641715
3641639
-
Ile
GAT
[ENA]
¡û
>W1911494844
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
3641553
3641478
-
Ile
GAT
[ENA]
¡û
>W1810073003
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
3979156
3979231
+
Ile
GAT
[ENA]
¡û
>W1810120764
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
4011057
4010982
-
Ile
GAT
[ENA]
¡û
>W1810172985
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
1713916
1713991
+
Ile
GAT
[ENA]
¡û
>W1810173045
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
3451135
3451060
-
Ile
GAT
[ENA]
¡û
>W1810173597
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
3017750
3017826
+
Ile
GAT
[ENA]
¡û
>W1810394671
PYBW01000013
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
97285
97360
+
Ile
GAT
[ENA]
¡û
>W1810684530
QKYN01000055
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
17302
17226
-
Ile
GAT
[ENA]
¡û
>W1810694019
QLLT01000018
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
101926
101851
-
Ile
GAT
[ENA]
¡û
>W1810907949
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
5710617
5710693
+
Ile
GAT
[ENA]
¡û
>W1810907950
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
5710779
5710854
+
Ile
GAT
[ENA]
¡û
>W1510014121
BBPN01000086
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
642
718
+
Ile
GAT
[ENA]
¡û
>W1510014187
BBPO01000153
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
6232
6156
-
Ile
GAT
[ENA]
¡û
>W1510014194
BBPP01000005
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
539
615
+
Ile
GAT
[ENA]
¡û
>W1510014268
BBPQ01000004
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
136647
136723
+
Ile
GAT
[ENA]
¡û
>W1510071680
CDGT01000013
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
68246
68170
-
Ile
GAT
[ENA]
¡û
>C11111745
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
4383368
4383444
+
Ile
GAT
[Ensembl]
¡û
>W1511311658
JPRF01000417
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
23200
23124
-
Ile
GAT
[ENA]
¡û
>W1511311659
JPRF01000417
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
23034
22958
-
Ile
GAT
[ENA]
¡û
>W1511519294
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
2325562
2325638
+
Ile
GAT
[ENA]
¡û
>W1511529064
JYJF01000034
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
38462
38386
-
Ile
GAT
[ENA]
¡û
>W1511545194
JZKG01000080
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
18323
18399
+
Ile
GAT
[ENA]
¡û
>W1511545195
JZKG01000080
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
18504
18580
+
Ile
GAT
[ENA]
¡û
>W1511545256
JZKH01000039
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
48418
48342
-
Ile
GAT
[ENA]
¡û
>W1511545257
JZKH01000039
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
48237
48161
-
Ile
GAT
[ENA]
¡û
>W1511590499
LBHA01000803
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
1145
1221
+
Ile
GAT
[ENA]
¡û
>W1511687922
LFVW01000521
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
7113
7037
-
Ile
GAT
[ENA]
¡û
>W121126456
BAGZ01000018
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
94052
94130
+
Ile
GAT
[ENA]
¡û
>W121124430
BAFE01000061
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
37924
37850
-
Ile
GAT
[ENA]
¡û
>W121126633
BAHD01000019
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
60829
60753
-
Ile
GAT
[ENA]
¡û
>W1610062592
BCNQ01000119
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
1734
1810
+
Ile
GAT
[ENA]
¡û
>W1610650812
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3775801
3775725
-
Ile
GAT
[ENA]
¡û
>W1610722292
LMCM01000007
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
371105
371181
+
Ile
GAT
[ENA]
¡û
>W1610722611
LMCT01000003
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
59565
59641
+
Ile
GAT
[ENA]
¡û
>W1610727544
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
2403250
2403174
-
Ile
GAT
[ENA]
¡û
>W1610729319
LMHX01000031
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
57981
58057
+
Ile
GAT
[ENA]
¡û
>W1610742408
LMSC01000006
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
51285
51361
+
Ile
GAT
[ENA]
¡û
>W1610742547
LMSE01000001
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
258487
258411
-
Ile
GAT
[ENA]
¡û
>W1610743317
LMSS01000002
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
97584
97508
-
Ile
GAT
[ENA]
¡û
>W1610743349
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
197637
197713
+
Ile
GAT
[ENA]
¡û
>W1710060068
BCNQ01000119
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
1734
1810
+
Ile
GAT
[ENA]
¡û
>W1710544666
FOAZ01000003
Actinomycetota
Streptacidiphilus jiangxiensis [FOAZ]
267838
267914
+
Ile
GAT
[ENA]
¡û
>W1710552759
FOHB01000004
Actinomycetota
Pedococcus cremeus [FOHB]
493833
493909
+
Ile
GAT
[ENA]
¡û
>W1710555178
FOJD01000005
Actinomycetota
Austwickia chelonae [FOJD]
94145
94223
+
Ile
GAT
[ENA]
¡û
>W1710765818
LIPD01000003
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
685504
685580
+
Ile
GAT
[ENA]
¡û
>W1710765819
LIPD01000003
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
685666
685742
+
Ile
GAT
[ENA]
¡û
>W1710769506
LISX01000001
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
52239
52163
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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