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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276061 (123 seq.)
>W1711066749
LSDD01000177
Fusobacteriota
Leptotrichia wadei [LSDD]
3388
3463
+
His
GTG
[ENA]
¡û
>W1711139054
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
5774
5849
+
His
GTG
[ENA]
¡û
>W1711139154
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
5774
5849
+
His
GTG
[ENA]
¡û
>W131222030
AUAY01000017
Fusobacteriota
Leptotrichia hofstadii DSM 21651 [AUAY]
165095
165170
+
His
GTG
[ENA]
¡û
>W131167269
ARDD01000003
Fusobacteriota
Leptotrichia shahii DSM 19757 [ARDD]
144480
144555
+
His
GTG
[ENA]
¡û
>W131167986
ARDS01000005
Fusobacteriota
Leptotrichia wadei DSM 19758 [ARDS]
106681
106756
+
His
GTG
[ENA]
¡û
>WENV180003927
FLRP01038861
[FLRP] metagenome; saliva
67
142
+
His
GTG
[ENA]
¡û
>WENV180402304
OBRO01023438
[OBRO] human gut metagenome; ENVO:feces
27
102
+
His
GTG
[ENA]
¡û
>W141054933
AOJP01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
49142
49067
-
His
GTG
[ENA]
¡û
>WENV180724459
ODGR01000876
[ODGR] human metagenome; G_DNA_Tongue dorsum
197
272
+
His
GTG
[ENA]
¡û
>WENV180733251
ODGY01080891
[ODGY] human metagenome; G_DNA_Supragingival plaque
11
86
+
His
GTG
[ENA]
¡û
>WENV180733320
ODGY01123590
[ODGY] human metagenome; G_DNA_Supragingival plaque
132
57
-
His
GTG
[ENA]
¡û
>WENV180757061
ODHW01000017
[ODHW] human metagenome; G_DNA_Tongue dorsum
20030
19955
-
His
GTG
[ENA]
¡û
>WENV180762991
ODIA01000019
[ODIA] human metagenome; G_DNA_Tongue dorsum
52720
52645
-
His
GTG
[ENA]
¡û
>WENV180768336
ODIG01005337
[ODIG] human metagenome; G_DNA_Tongue dorsum
95
170
+
His
GTG
[ENA]
¡û
>WENV180768692
ODIG01013436
[ODIG] human metagenome; G_DNA_Tongue dorsum
2741
2666
-
His
GTG
[ENA]
¡û
>WENV180769446
ODIG01073760
[ODIG] human metagenome; G_DNA_Tongue dorsum
83
158
+
His
GTG
[ENA]
¡û
>WENV180790599
ODIT01021681
[ODIT] human metagenome; G_DNA_Tongue dorsum
243
168
-
His
GTG
[ENA]
¡û
>WENV180792517
ODIW01000703
[ODIW] human metagenome; G_DNA_Tongue dorsum
562
487
-
His
GTG
[ENA]
¡û
>WENV180794741
ODIZ01004644
[ODIZ] human metagenome; G_DNA_Tongue dorsum
3457
3532
+
His
GTG
[ENA]
¡û
>WENV180802527
ODJE01002934
[ODJE] human metagenome; G_DNA_Tongue dorsum
5897
5972
+
His
GTG
[ENA]
¡û
>WENV180814872
ODJO01078393
[ODJO] human metagenome; G_DNA_Supragingival plaque
111
186
+
His
GTG
[ENA]
¡û
>WENV180816897
ODJP01099434
[ODJP] human metagenome; G_DNA_Tongue dorsum
161
86
-
His
GTG
[ENA]
¡û
>WENV180831339
ODKB01103967
[ODKB] human metagenome; G_DNA_Tongue dorsum
294
219
-
His
GTG
[ENA]
¡û
>WENV180835761
ODKE01011180
[ODKE] human metagenome; G_DNA_Supragingival plaque
2343
2268
-
His
GTG
[ENA]
¡û
>WENV180843111
ODKN01000571
[ODKN] human metagenome; G_DNA_Supragingival plaque
110
185
+
His
GTG
[ENA]
¡û
>WENV180855426
ODKX01108405
[ODKX] human metagenome; G_DNA_Tongue dorsum
161
86
-
His
GTG
[ENA]
¡û
>WENV180861345
ODLE01002998
[ODLE] human metagenome; G_DNA_Tongue dorsum
2681
2606
-
His
GTG
[ENA]
¡û
>WENV180863739
ODLH01001823
[ODLH] human metagenome; G_DNA_Tongue dorsum
2957
2882
-
His
GTG
[ENA]
¡û
>WENV180880449
ODLZ01023206
[ODLZ] human metagenome; G_DNA_Tongue dorsum
377
302
-
His
GTG
[ENA]
¡û
>WENV180883001
ODMC01001257
[ODMC] human metagenome; G_DNA_Tongue dorsum
9178
9253
+
His
GTG
[ENA]
¡û
>WENV180890713
ODMO01010705
[ODMO] human metagenome; G_DNA_Tongue dorsum
109
184
+
His
GTG
[ENA]
¡û
>WENV180896226
ODNI01000216
[ODNI] human metagenome; G_DNA_Tongue dorsum
20074
19999
-
His
GTG
[ENA]
¡û
>WENV180896432
ODNI01000647
[ODNI] human metagenome; G_DNA_Tongue dorsum
1758
1833
+
His
GTG
[ENA]
¡û
>WENV180929055
ODTN01000428
[ODTN] human metagenome; G_DNA_Tongue dorsum
25838
25763
-
His
GTG
[ENA]
¡û
>WENV180929356
ODTN01001962
[ODTN] human metagenome; G_DNA_Tongue dorsum
7231
7306
+
His
GTG
[ENA]
¡û
>WENV180953380
ODUI01026252
[ODUI] human metagenome; G_DNA_Tongue dorsum
343
418
+
His
GTG
[ENA]
¡û
>WENV180959225
ODUM01000186
[ODUM] human metagenome; G_DNA_Tongue dorsum
34941
34866
-
His
GTG
[ENA]
¡û
>WENV180964070
ODUO01000216
[ODUO] human metagenome; G_DNA_Supragingival plaque
8969
8894
-
His
GTG
[ENA]
¡û
>WENV180967794
ODUT01003557
[ODUT] human metagenome; G_DNA_Tongue dorsum
561
486
-
His
GTG
[ENA]
¡û
>WENV180968281
ODUT01016401
[ODUT] human metagenome; G_DNA_Tongue dorsum
596
521
-
His
GTG
[ENA]
¡û
>WENV180975262
ODUY01003635
[ODUY] human metagenome; G_DNA_Supragingival plaque
4977
4902
-
His
GTG
[ENA]
¡û
>WENV180976286
ODUY01070842
[ODUY] human metagenome; G_DNA_Supragingival plaque
701
626
-
His
GTG
[ENA]
¡û
>WENV180983273
ODVF01006598
[ODVF] human metagenome; G_DNA_Supragingival plaque
263
188
-
His
GTG
[ENA]
¡û
>WENV181011522
ODWI01042071
[ODWI] human metagenome; G_DNA_Tongue dorsum
161
86
-
His
GTG
[ENA]
¡û
>WENV181013692
ODWN01002724
[ODWN] human metagenome; G_DNA_Tongue dorsum
5822
5897
+
His
GTG
[ENA]
¡û
>WENV181017574
ODWR01152734
[ODWR] human metagenome; G_DNA_Tongue dorsum
72
147
+
His
GTG
[ENA]
¡û
>WENV181019764
ODWU01013678
[ODWU] human metagenome; G_DNA_Supragingival plaque
2177
2102
-
His
GTG
[ENA]
¡û
>WENV181019952
ODWU01027683
[ODWU] human metagenome; G_DNA_Supragingival plaque
1169
1094
-
His
GTG
[ENA]
¡û
>WENV181038196
ODXQ01000588
[ODXQ] human metagenome; G_DNA_Tongue dorsum
25892
25817
-
His
GTG
[ENA]
¡û
>WENV181038548
ODXQ01002103
[ODXQ] human metagenome; G_DNA_Tongue dorsum
10816
10891
+
His
GTG
[ENA]
¡û
>WENV181040121
ODXQ01154458
[ODXQ] human metagenome; G_DNA_Tongue dorsum
109
184
+
His
GTG
[ENA]
¡û
>WENV181041038
ODXS01003427
[ODXS] human metagenome; G_DNA_Tongue dorsum
6095
6170
+
His
GTG
[ENA]
¡û
>WENV181045230
ODXW01000028
[ODXW] human metagenome; G_DNA_Tongue dorsum
100798
100873
+
His
GTG
[ENA]
¡û
>WENV181057611
ODYL01000481
[ODYL] human metagenome; G_DNA_Tongue dorsum
5
80
+
His
GTG
[ENA]
¡û
>WENV181057776
ODYL01001093
[ODYL] human metagenome; G_DNA_Tongue dorsum
5
80
+
His
GTG
[ENA]
¡û
>WENV181058127
ODYL01004008
[ODYL] human metagenome; G_DNA_Tongue dorsum
6099
6174
+
His
GTG
[ENA]
¡û
>WENV181081752
OEAS01360139
[OEAS] human metagenome; G_DNA_Supragingival plaque
267
192
-
His
GTG
[ENA]
¡û
>WENV181094457
OEBY01000203
[OEBY] human metagenome; G_DNA_Tongue dorsum
20965
20890
-
His
GTG
[ENA]
¡û
>WENV181097368
OECA01006799
[OECA] human metagenome; G_DNA_Tongue dorsum
3307
3232
-
His
GTG
[ENA]
¡û
>WENV181103332
OECT01077288
[OECT] human metagenome; G_DNA_Tongue dorsum
83
158
+
His
GTG
[ENA]
¡û
>WENV181103610
OECV01000538
[OECV] human metagenome; G_DNA_Throat
9609
9684
+
His
GTG
[ENA]
¡û
>WENV181106365
OEED01128648
[OEED] human metagenome; G_DNA_Tongue dorsum
83
158
+
His
GTG
[ENA]
¡û
>WENV181113523
OEEL01036256
[OEEL] human metagenome; G_DNA_Tongue dorsum
586
511
-
His
GTG
[ENA]
¡û
>WENV181115570
OEEO01139607
[OEEO] human metagenome; G_DNA_Supragingival plaque
109
184
+
His
GTG
[ENA]
¡û
>WENV181124747
OEFT01001299
[OEFT] human metagenome; G_DNA_Tongue dorsum
5310
5385
+
His
GTG
[ENA]
¡û
>WENV181135279
OEGG01008410
[OEGG] human metagenome; G_DNA_Tongue dorsum
182
257
+
His
GTG
[ENA]
¡û
>WENV181139046
OEGN01002551
[OEGN] human metagenome; G_DNA_Tongue dorsum
7015
6940
-
His
GTG
[ENA]
¡û
>WENV181140233
OEGN01085003
[OEGN] human metagenome; G_DNA_Tongue dorsum
268
193
-
His
GTG
[ENA]
¡û
>WENV181140428
OEGN01160689
[OEGN] human metagenome; G_DNA_Tongue dorsum
83
158
+
His
GTG
[ENA]
¡û
>WENV181181119
OEJU01006145
[OEJU] human metagenome; G_DNA_Supragingival plaque
115
190
+
His
GTG
[ENA]
¡û
>WENV181574701
OGJT01003777
[OGJT] metagenome; Human gut stool
900
825
-
His
GTG
[ENA]
¡û
>W141220494
AZXW01000001
Fusobacteriota
Pseudoleptotrichia goodfellowii DSM 19756 [AZXW]
330254
330329
+
His
GTG
[ENA]
¡û
>WENV182478386
OIQN01000727
[OIQN] human gut metagenome; human gut
307
232
-
His
GTG
[ENA]
¡û
>WENV182499666
OITU01000049
[OITU] human gut metagenome; human gut
2769
2694
-
His
GTG
[ENA]
¡û
>W141273949
JAAC01000108
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
45648
45723
+
His
GTG
[ENA]
¡û
>W141274008
JAAE01000074
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
4200
4125
-
His
GTG
[ENA]
¡û
>W141274103
JAAH01000172
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
5412
5337
-
His
GTG
[ENA]
¡û
>WENV182984236
OKZL01000890
[OKZL] human gut metagenome; human gut
866
941
+
His
GTG
[ENA]
¡û
>WENV183115790
OLNQ01020339
[OLNQ] human gut metagenome; faeces
1122
1197
+
His
GTG
[ENA]
¡û
>C181020506
CP016753
Fusobacteriota
Leptotrichia sp. oral taxon 498 F0590 [CP016753]
1068683
1068758
+
His
GTG
-
¡û
>C181161118
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
253231
253156
-
His
GTG
-
¡û
>C181161151
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
339063
339138
+
His
GTG
-
¡û
>C191015339
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
31661
31736
+
His
GTG
-
¡û
>C191016011
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
33489
33564
+
His
GTG
-
¡û
>C191113370
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1133219
1133144
-
His
GTG
-
¡û
>C191132390
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
423427
423502
+
His
GTG
-
¡û
>W141559455
JHWT01000015
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
46503
46578
+
His
GTG
[ENA]
¡û
>W09118631
ACDD01000064
Fusobacteriota
Fusobacterium gonidiaformans 3_1_5R [ACDD]
4199
4124
-
His
GTG
[ENA]
¡û
>W09118725
ACDG01000024
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
5172
5247
+
His
GTG
[ENA]
¡û
>W09120613
ACET01000020
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [ACET]
37815
37890
+
His
GTG
[ENA]
¡û
>W2010263958
CABKOB020000026
Fusobacteriota
Fusobacterium gonidiaformans [CABKOB]
229111
229036
-
His
GTG
[ENA]
¡û
>W2010382835
FNVZ01000004
Fusobacteriota
Leptotrichia massiliensis Marseille-P3007 [FNVZ]
100377
100302
-
His
GTG
[ENA]
¡û
>W2010652329
JABXYV010000001
Fusobacteriota
Leptotrichia sp. oral taxon 417 F0703 [JABXYV]
2037050
2036975
-
His
GTG
[ENA]
¡û
>W2011529568
SBAO01000002
Fusobacteriota
Fusobacterium necrophorum KG34 [SBAO]
9119
9194
+
His
GTG
[ENA]
¡û
>W2011529625
SBAP01000009
Fusobacteriota
Fusobacterium necrophorum KG35 [SBAP]
35332
35407
+
His
GTG
[ENA]
¡û
>W2011654637
SOBG01000001
Fusobacteriota
Hypnocyclicus thermotrophus DSM 100055 [SOBG]
114191
114116
-
His
GTG
[ENA]
¡û
>W2011654667
SOBG01000005
Fusobacteriota
Hypnocyclicus thermotrophus DSM 100055 [SOBG]
47546
47471
-
His
GTG
[ENA]
¡û
>W2011766288
UAWW01000062
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum NCTC13726 [UAWW]
1249794
1249869
+
His
GTG
[ENA]
¡û
>W2012218382
VZOZ01000009
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme CCUG 42162 [VZOZ]
45830
45755
-
His
GTG
[ENA]
¡û
>W2110374413
JADRFZ010000016
Fusobacteriota
Fusobacterium necrophorum DD41 [JADRFZ]
45596
45671
+
His
GTG
[ENA]
¡û
>W2110374599
JADRGD010000008
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme DD37 [JADRGD]
46651
46726
+
His
GTG
[ENA]
¡û
>W2110375616
JADRGY010000016
Fusobacteriota
Fusobacterium necrophorum DD16 [JADRGY]
45647
45722
+
His
GTG
[ENA]
¡û
>W2110376200
JADRHJ010000004
Fusobacteriota
Fusobacterium necrophorum DD5 [JADRHJ]
45599
45674
+
His
GTG
[ENA]
¡û
>C211307141
CP072377
Fusobacteriota
Leptotrichia sp. oral taxon 218 F0707 [CP072377]
1628295
1628220
-
His
GTG
-
¡û
>C211307157
CP072378
Fusobacteriota
Leptotrichia sp. oral taxon 221 F0705 [CP072378]
234870
234945
+
His
GTG
-
¡û
>C241002781
AP019822
Fusobacteriota
Pseudoleptotrichia goodfellowii JCM16774 [AP019822]
330345
330420
+
His
GTG
-
¡û
>C241002897
AP019827
Fusobacteriota
Leptotrichia shahii JCM16776 [AP019827]
1795059
1794984
-
His
GTG
-
¡û
>C241002930
AP019829
Fusobacteriota
Leptotrichia wadei JCM16777 [AP019829]
355665
355740
+
His
GTG
-
¡û
>C241003021
AP019834
Fusobacteriota
Leptotrichia wadei JMUB3933 [AP019834]
354788
354863
+
His
GTG
-
¡û
>C241003066
AP019835
Fusobacteriota
Leptotrichia wadei JMUB3934 [AP019835]
367601
367676
+
His
GTG
-
¡û
>C241003176
AP019841
Fusobacteriota
Leptotrichia wadei JMUB3936 [AP019841]
1977679
1977604
-
His
GTG
-
¡û
>C241003268
AP019846
Fusobacteriota
Leptotrichia hongkongensis JMUB5056 [AP019846]
1853301
1853226
-
His
GTG
-
¡û
>C161069085
CP014231
Fusobacteriota
Leptotrichia sp. oral taxon 847 F0260 [CP014231]
1568626
1568701
+
His
GTG
[Ensembl]
¡û
>W1610026571
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
48100
48025
-
His
GTG
[ENA]
¡û
>W121001910
ADLZ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
48533
48458
-
His
GTG
[ENA]
¡û
>W121066984
AJSY01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
4720
4645
-
His
GTG
[ENA]
¡û
>W121112301
ALKK01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme Fnf 1007 [ALKK]
3858
3933
+
His
GTG
[ENA]
¡û
>W1610907319
LSDD01000177
Fusobacteriota
Leptotrichia wadei [LSDD]
3388
3463
+
His
GTG
[ENA]
¡û
>W1610950062
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
5774
5849
+
His
GTG
[ENA]
¡û
>W1610950162
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
5774
5849
+
His
GTG
[ENA]
¡û
>W1710022620
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
48100
48025
-
His
GTG
[ENA]
¡û
>W1710510366
FMXX01000016
Fusobacteriota
Fusobacterium necrophorum [FMXX]
5885
5810
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
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Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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