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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276372 (21 seq.)
>A178000157
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
288383
288486
+
Arg
TCT
-
¡û
>WENV180318400
OBKM01000687
[OBKM] metagenome; water
14403
14477
+
Arg
TCT
[ENA]
¡û
>WENV170679595
LFCJ01000062
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
41106
41032
-
Arg
TCT
[ENA]
¡û
>WENV170680553
LFCJ01014658
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
76
2
-
Arg
TCT
[ENA]
¡û
>WENV170681635
LFFM01001772
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
10026
10100
+
Arg
TCT
[ENA]
¡û
>WENV170681848
LFFM01003462
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8252
8178
-
Arg
TCT
[ENA]
¡û
>WENV170702588
LKMJ01002761
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
13180
13254
+
Arg
TCT
[ENA]
¡û
>WENV170703618
LKMJ01014595
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4751
4677
-
Arg
TCT
[ENA]
¡û
>A211000425
CP064786
Methanobacteriota
Halobacteriaceae archaeon AArc-S [CP064786]
278878
278803
-
Arg
TCT
-
¡û
>A211000975
CP071597
Methanobacteriota
Halovivax sp. KZCA124 [CP071597, CP071598]
2211183
2211257
+
Arg
TCT
-
¡û
>A241003228
CP119787
Methanobacteriota
Haloarcula halobia XH51 [CP119787]
455253
455327
+
Arg
TCT
-
¡û
>A241003489
CP132292
Methanobacteriota
Haloferacaceae archaeon XH8 [CP132292]
2228687
2228761
+
Arg
TCT
-
¡û
>A241004077
CP144461
Methanobacteriota
Halalkalicoccus sp. FCH27 [CP144461]
2885853
2885779
-
Arg
TCT
-
¡û
>C231436979
CP101458
Methanobacteriota
Natronobiforma sp. CGA73 [CP101458]
2841528
2841454
-
Arg
TCT
-
¡û
>W2010528942
JAAOHU010000001
Methanobacteriota
Halostella sp. JP-L12 [JAAOHU]
328039
327964
-
Arg
TCT
[ENA]
¡û
>W2011393575
RCDI01000001
Methanobacteriota
Halostella sp. LT12 [RCDI]
328039
327964
-
Arg
TCT
[ENA]
¡û
>W2011398184
RCIH01000002
Methanobacteriota
Halostella salina CBA1114 [RCIH]
199170
199095
-
Arg
TCT
[ENA]
¡û
>W2011410314
RDQG01000021
Methanobacteriota
Halalkalicoccus sp. GSM28 [RDQG]
16813
16888
+
Arg
TCT
[ENA]
¡û
>W2011604556
SJER01000001
Methanobacteriota
Halostella sp. DLLS-108 [SJER]
1306670
1306745
+
Arg
TCT
[ENA]
¡û
>W1610012639
AOIQ01000012
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
53450
53375
-
Arg
TCT
[ENA]
¡û
>W1610682660
LKNG01000092
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
8252
8178
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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