This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276690 (117 seq.)
>W1710792887
LJOS01000045
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
22030
21957
-
Pro
GGG
[ENA]
¡û
>W1710793006
LJOW01000045
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
15171
15244
+
Pro
GGG
[ENA]
¡û
>W1710793060
LJOX01000017
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
33476
33403
-
Pro
GGG
[ENA]
¡û
>W1710793122
LJOY01000053
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
16056
15983
-
Pro
GGG
[ENA]
¡û
>W1710882896
LMVE01000086
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
28260
28333
+
Pro
GGG
[ENA]
¡û
>W1711081226
LSSA01000088
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
25696
25623
-
Pro
GGG
[ENA]
¡û
>W1711092450
LTEC01000025
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
2052
1979
-
Pro
GGG
[ENA]
¡û
>W1711116528
LUBZ01000011
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
67711
67784
+
Pro
GGG
[ENA]
¡û
>W1711261778
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
3830866
3830793
-
Pro
GGG
[ENA]
¡û
>W1711283597
LZQD01000001
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
1164011
1163938
-
Pro
GGG
[ENA]
¡û
>W1711335589
MBQX01000063
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
21742
21815
+
Pro
GGG
[ENA]
¡û
>W1711335644
MBQY01000080
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
248053
248126
+
Pro
GGG
[ENA]
¡û
>W1711335747
MBRD01000004
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
176164
176237
+
Pro
GGG
[ENA]
¡û
>W1711666576
MRCC01000004
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
191278
191351
+
Pro
GGG
[ENA]
¡û
>W1711666737
MRCF01000091
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
15761
15834
+
Pro
GGG
[ENA]
¡û
>W1711979735
NDGV01000008
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
11190
11263
+
Pro
GGG
[ENA]
¡û
>PL171000186
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
365099
365172
+
Pro
GGG
[ENA]
¡û
>C171097562
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
1757012
1756939
-
Pro
GGG
-
¡û
>W131036550
ALVW01000014
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
465748
465675
-
Pro
GGG
[ENA]
¡û
>W131058298
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
447179
447252
+
Pro
GGG
[ENA]
¡û
>W131065833
ANNX01000051
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
18241
18314
+
Pro
GGG
[ENA]
¡û
>W131089978
AOFE01000024
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
112807
112880
+
Pro
GGG
[ENA]
¡û
>W131110085
APIY01000046
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
43534
43607
+
Pro
GGG
[ENA]
¡û
>W131110152
APIZ01000270
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
11237
11310
+
Pro
GGG
[ENA]
¡û
>C001234
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
2494686
2494613
-
Pro
GGG
[Ensembl]
¡û
>C015290
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
5553520
5553593
+
Pro
GGG
[Ensembl]
¡û
>w021684
AAVW01000005
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
36680
36604
-
Pro
GGG
[ENA]
¡û
>W141022916
AJWF01000009
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
599328
599255
-
Pro
GGG
[ENA]
¡û
>w002257
AAAY02000013
Cyanobacteriota
Nostoc punctiforme [AAAY]
4830
4906
+
Pro
GGG
[ENA]
¡û
>WENV181411055
OGCI01011579
[OGCI] hot springs metagenome; Hot spring water
606
533
-
Pro
GGG
[ENA]
¢þ
>WENV181841059
OGVQ01000053
[OGVQ] freshwater metagenome; freshwater
25675
25748
+
Pro
GGG
[ENA]
¢þ
>C08006920
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
7507414
7507341
-
Pro
GGG
[Ensembl]
¡û
>WENV183702507
PDVI01001079
[PDVI] alkali sediment metagenome; glacial lake sediment
2777
2852
+
Pro
GGG
[ENA]
¢þ
>WENV170995871
MWWF01080176
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
115
42
-
Pro
GGG
[ENA]
¢þ
>WENV171003097
NNBT01000863
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
464
537
+
Pro
GGG
[ENA]
¢þ
>WENV171003475
NNBU01000079
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
55494
55567
+
Pro
GGG
[ENA]
¢þ
>WENV171003685
NNBV01000130
[NNBV] plant metagenome; symbiotic tissue sample KVS11
557
484
-
Pro
GGG
[ENA]
¢þ
>C181004985
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
6870818
6870745
-
Pro
GGG
-
¡û
>C181043620
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
2177105
2177178
+
Pro
GGG
-
¡û
>C181078437
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
3617345
3617272
-
Pro
GGG
-
¡û
>C181105234
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
4714641
4714714
+
Pro
GGG
-
¡û
>C181137754
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4383589
4383516
-
Pro
GGG
-
¡û
>C181137795
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
723684
723757
+
Pro
GGG
-
¡û
>C191001281
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4815591
4815518
-
Pro
GGG
-
¡û
>C191083017
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
1672808
1672881
+
Pro
GGG
-
¡û
>W09125757
ACIR01000068
Cyanobacteriota
Trichormus azollae 708 [ACIR]
24157
24230
+
Pro
GGG
[ENA]
¡û
>W141805281
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
717487
717414
-
Pro
GGG
[ENA]
¡û
>W1910008378
BDGE01000023
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
254990
255063
+
Pro
GGG
[ENA]
¡û
>W1910020503
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
4793508
4793581
+
Pro
GGG
[ENA]
¡û
>W1910175498
BJCE01000019
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
15223
15296
+
Pro
GGG
[ENA]
¡û
>W1910175551
BJCF01000017
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
29024
29097
+
Pro
GGG
[ENA]
¡û
>W1910646696
LWSY01000166
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
7742
7669
-
Pro
GGG
[ENA]
¡û
>W1910792680
MRBZ01000043
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
55426
55351
-
Pro
GGG
[ENA]
¡û
>W1910805289
MTPU01000055
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
44685
44612
-
Pro
GGG
[ENA]
¡û
>W1910812563
MVDI01000013
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
53920
53993
+
Pro
GGG
[ENA]
¡û
>W1910859290
NBYN01000055
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
78530
78603
+
Pro
GGG
[ENA]
¡û
>W1910943187
NJHS01000086
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
19975
20048
+
Pro
GGG
[ENA]
¡û
>W1910943212
NJHT01000021
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
19981
20054
+
Pro
GGG
[ENA]
¡û
>W1910943261
NJHU01000060
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
78635
78562
-
Pro
GGG
[ENA]
¡û
>W1910943301
NJHV01000350
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
27318
27245
-
Pro
GGG
[ENA]
¡û
>W1910943347
NJHW01000406
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
21816
21889
+
Pro
GGG
[ENA]
¡û
>W1910943355
NJHX01000002
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
21817
21890
+
Pro
GGG
[ENA]
¡û
>W1910943424
NJHY01000108
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
114860
114787
-
Pro
GGG
[ENA]
¡û
>W1910943468
NJHZ01000267
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
81148
81075
-
Pro
GGG
[ENA]
¡û
>W1910943484
NJIA01000009
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
78398
78325
-
Pro
GGG
[ENA]
¡û
>W1911118667
NOLI01000101
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
28830
28757
-
Pro
GGG
[ENA]
¡û
>W1911118759
NOLJ01000008
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
3276
3203
-
Pro
GGG
[ENA]
¡û
>W1911118818
NOLK01000067
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
24951
25024
+
Pro
GGG
[ENA]
¡û
>W1911153661
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
3347421
3347348
-
Pro
GGG
[ENA]
¡û
>W1911244252
NSHF01000004
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
19544
19471
-
Pro
GGG
[ENA]
¡û
>W1911244313
NSHF01000944
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
762
835
+
Pro
GGG
[ENA]
¡û
>W1911581777
PGEM01000046
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
19953
20026
+
Pro
GGG
[ENA]
¡û
>W1911638323
PVWL01000026
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
60334
60261
-
Pro
GGG
[ENA]
¡û
>W1911638382
PVWM01000354
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
1307
1380
+
Pro
GGG
[ENA]
¡û
>W1911641170
PYCI01000038
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
21521
21448
-
Pro
GGG
[ENA]
¡û
>W1911741973
QVFW01000002
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
458223
458296
+
Pro
GGG
[ENA]
¡û
>W1810076215
PEIG01000009
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
142266
142193
-
Pro
GGG
[ENA]
¡û
>W1810296696
PTJN01000014
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
153514
153441
-
Pro
GGG
[ENA]
¡û
>W1810355659
PVMC01000045
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
56131
56204
+
Pro
GGG
[ENA]
¡û
>C151081812
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
715488
715415
-
Pro
GGG
[Ensembl]
¡û
>W10106025
ACYA01000025
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
143005
143078
+
Pro
GGG
[ENA]
¡û
>W10106083
ACYB01000042
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
193286
193213
-
Pro
GGG
[ENA]
¡û
>W11108348
ACYA01000025
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
143005
143078
+
Pro
GGG
[ENA]
¡û
>W11108406
ACYB01000042
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
193286
193213
-
Pro
GGG
[ENA]
¡û
>C11115540
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
2767799
2767872
+
Pro
GGG
[Ensembl]
¡û
>W1511013885
JHEG02000059
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
1291124
1291051
-
Pro
GGG
[ENA]
¡û
>W1511108027
JJML01000063
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
20618
20545
-
Pro
GGG
[ENA]
¡û
>W1511397009
JTCM01000018
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
108346
108419
+
Pro
GGG
[ENA]
¡û
>W1511401802
JTJC01000086
Cyanobacteriota
Scytonema millei VB511283 [JTJC]
2818195
2818122
-
Pro
GGG
[ENA]
¡û
>W1511501660
JXCA01000008
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
424439
424512
+
Pro
GGG
[ENA]
¡û
>W1511501713
JXCB01000005
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
219397
219324
-
Pro
GGG
[ENA]
¡û
>C161002514
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
5832223
5832296
+
Pro
GGG
[Ensembl]
¡û
>C161005331
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
1812351
1812424
+
Pro
GGG
[Ensembl]
¡û
>C161038877
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
3227544
3227617
+
Pro
GGG
[Ensembl]
¡û
>W1610003531
AGCR01000025
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2695
2622
-
Pro
GGG
[ENA]
¡û
>C131004715
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
6201147
6201072
-
Pro
GGG
[Ensembl]
¡û
>C131004168
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3708497
3708424
-
Pro
GGG
[Ensembl]
¡û
>C131004283
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
5030071
5029998
-
Pro
GGG
[Ensembl]
¡û
>C131004511
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
2728821
2728894
+
Pro
GGG
[Ensembl]
¡û
>C131004934
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
4102877
4102804
-
Pro
GGG
[Ensembl]
¡û
>C131004974
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
2998157
2998230
+
Pro
GGG
[Ensembl]
¡û
>C131005045
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
1859062
1859135
+
Pro
GGG
[Ensembl]
¡û
>C131010294
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
3432566
3432639
+
Pro
GGG
[Ensembl]
¡û
>W1610656803
LJOR01000043
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
149028
149101
+
Pro
GGG
[ENA]
¡û
>W1610656851
LJOS01000045
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
22030
21957
-
Pro
GGG
[ENA]
¡û
>W1610656886
LJOT01000152
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
9244
9171
-
Pro
GGG
[ENA]
¡û
>W1610657010
LJOW01000045
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
15171
15244
+
Pro
GGG
[ENA]
¡û
>W1610657064
LJOX01000017
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
33476
33403
-
Pro
GGG
[ENA]
¡û
>W1610657126
LJOY01000053
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
16056
15983
-
Pro
GGG
[ENA]
¡û
>W1610744822
LMVE01000086
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
28260
28333
+
Pro
GGG
[ENA]
¡û
>W1610926488
LTEC01000025
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
2052
1979
-
Pro
GGG
[ENA]
¡û
>W1610927770
LUBZ01000011
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
67711
67784
+
Pro
GGG
[ENA]
¡û
>W1610979386
LWAJ01000091
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
1668
1595
-
Pro
GGG
[ENA]
¡û
>W1611023753
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
3830866
3830793
-
Pro
GGG
[ENA]
¡û
>W1611066454
MBRD01000004
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
176164
176237
+
Pro
GGG
[ENA]
¡û
>W1710004151
AGCR01000025
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2695
2622
-
Pro
GGG
[ENA]
¡û
>W1710088049
BDUC01000004
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
669307
669234
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK