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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27708 (26 seq.)
>W1710875577
LMOM01000087
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
136208
136119
-
Ser
GGA
[ENA]
¡û
>W131104594
APCS01000093
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
1959
2048
+
Ser
GGA
[ENA]
¡û
>W1711708251
MSTI01000093
Deinococcota
Deinococcus marmoris [MSTI]
36547
36458
-
Ser
GGA
[ENA]
¡û
>C007942
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2045580
2045669
+
Ser
GGA
[Ensembl]
¡û
>WENV180232461
OBCO01000522
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
1358
1447
+
Ser
GGA
[ENA]
¢þ
>WENV180233413
OBCP01000515
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
1359
1448
+
Ser
GGA
[ENA]
¢þ
>WENV180569876
OCLR01000649
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
1358
1447
+
Ser
GGA
[ENA]
¢þ
>WENV180570814
OCLS01000655
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
1359
1448
+
Ser
GGA
[ENA]
¢þ
>WENV180571788
OCLT01000500
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
1358
1447
+
Ser
GGA
[ENA]
¢þ
>WENV180574038
OCLW01000523
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
1359
1448
+
Ser
GGA
[ENA]
¢þ
>WENV180640086
OCRL01000494
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
1358
1447
+
Ser
GGA
[ENA]
¢þ
>WENV180641062
OCRM01000526
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
1359
1448
+
Ser
GGA
[ENA]
¢þ
>W141154768
AXLL01000044
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
16299
16210
-
Ser
GGA
[ENA]
¡û
>C181196485
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
218553
218464
-
Ser
GGA
-
¡û
>W141561488
JHYL01000026
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
17837
17748
-
Ser
GGA
[ENA]
¡û
>W141702085
JMLF01000031
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
17837
17748
-
Ser
GGA
[ENA]
¡û
>W141731109
JNIV01000007
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
84318
84407
+
Ser
GGA
[ENA]
¡û
>W141731183
JNIW01000031
Deinococcota
Deinococcus frigens DSM 12807 [JNIW]
14795
14706
-
Ser
GGA
[ENA]
¡û
>C09103909
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
1914799
1914710
-
Ser
GGA
[Ensembl]
¡û
>C151063628
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
58674
58763
+
Ser
GGA
[Ensembl]
¡û
>C10105344
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2045580
2045669
+
Ser
GGA
[Ensembl]
¡û
>C11107245
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1133048
1132959
-
Ser
GGA
[Ensembl]
¡û
>C11107271
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2045580
2045669
+
Ser
GGA
[Ensembl]
¡û
>C161082989
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
680104
680015
-
Ser
GGA
-
¡û
>W1610737923
LMOM01000087
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
136208
136119
-
Ser
GGA
[ENA]
¡û
>W1710605337
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
778826
778737
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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