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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277213 (21 seq.)
>W131224896
AUDD01000002
Actinomycetota
Acidipropionibacterium jensenii DSM 20535 [AUDD]
143441
143366
-
Thr
CGT
[ENA]
¡û
>W131230872
AUHZ01000008
Actinomycetota
Acidipropionibacterium thoenii DSM 20276 [AUHZ]
74935
75011
+
Thr
CGT
[ENA]
¡û
>C171044705
CP015970
Actinomycetota
Acidipropionibacterium acidipropionici F3E8 [CP015970]
1876025
1875950
-
Thr
CGT
-
¡û
>C171092741
CP019400
Actinomycetota
Acidipropionibacterium acidipropionici WSH1105 [CP019400]
1536328
1536253
-
Thr
CGT
-
¡û
>WENV182855296
OKMY01004370
[OKMY] human gut metagenome; human gut
1186
1113
-
Thr
CGT
[ENA]
¢þ
>WENV183708868
PDWI01020777
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1309
1384
+
Thr
CGT
[ENA]
¢þ
>WENV183709550
PDWI01029910
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
29
104
+
Thr
CGT
[ENA]
¢þ
>WENV183711072
PDWI01060554
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13
88
+
Thr
CGT
[ENA]
¢þ
>WENV170690996
LFRM01374722
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5939
6014
+
Thr
CGT
[ENA]
¢þ
>C181232162
LT996886
Actinomycetota
Tessaracoccus timonensis Marseille-P59951 [LT996886]
1664030
1664103
+
Thr
CGT
-
¡û
>C191030066
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
711658
711732
+
Thr
CGT
-
¡û
>C191036581
CP025571
Actinomycetota
Acidipropionibacterium jensenii JS279 [CP025571]
359946
360020
+
Thr
CGT
-
¡û
>C191073462
CP031057
Actinomycetota
Acidipropionibacterium acidipropionici WGS7 [CP031057]
1000275
1000350
+
Thr
CGT
-
¡û
>C191180440
CP040634
Actinomycetota
Acidipropionibacterium acidipropionici FAM 19036 [CP040634]
374017
374092
+
Thr
CGT
-
¡û
>C191180504
CP040635
Actinomycetota
Acidipropionibacterium jensenii FAM 19038 [CP040635]
1477845
1477919
+
Thr
CGT
-
¡û
>C191211326
LR134473
Actinomycetota
Acidipropionibacterium jensenii NCTC13652 [LR134473]
2198931
2199008
+
Thr
CGT
-
¡û
>C161051563
CP013126
Actinomycetota
Acidipropionibacterium acidipropionici CGMCC 1.2230 [CP013126]
1753096
1753171
+
Thr
CGT
-
¡û
>C161071883
CP014352
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 55737 [CP014352]
1577385
1577310
-
Thr
CGT
[Ensembl]
¡û
>C131003870
CP003493
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 4875 [CP003493]
3036606
3036531
-
Thr
CGT
[Ensembl]
¡û
>W1710521731
FNGP01000006
Actinomycetota
Tessaracoccus oleiagri [FNGP]
82016
81941
-
Thr
CGT
[ENA]
¡û
>W1710531792
FNPU01000008
Actinomycetota
Tessaracoccus flavus [FNPU]
56946
57021
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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