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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277230 (77 seq.)
>W1710778596
LJDB01000043
Bacillota
Epulopiscium sp. SCG-B11WGA-EpuloA1 [LJDB]
149812
149740
-
Thr
TGT
[ENA]
¡û
>W1710784705
LJHC01000029
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
308
380
+
Thr
TGT
[ENA]
¡û
>W1710784736
LJHC01000101
Bacillota
Epulopiscium sp. SCG-B05WGA-EpuloA1 [LJHC]
30265
30193
-
Thr
TGT
[ENA]
¡û
>w016936
AAQT01000084
Bacillota
Lachnoclostridium phytofermentans ISDg [AAQT]
13928
13853
-
Thr
TGT
[ENA]
¡û
>w016910
AAQT01000022
Bacillota
Lachnoclostridium phytofermentans ISDg [AAQT]
1209
1284
+
Thr
TGT
[ENA]
¡û
>WENV180042655
LQAG01000005
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
182362
182290
-
Thr
TGT
[ENA]
¢þ
>WENV180043296
LQAH01025004
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
181
109
-
Thr
TGT
[ENA]
¢þ
>WENV180043346
LQAH01033379
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
102
174
+
Thr
TGT
[ENA]
¢þ
>WENV180197989
OBAB01048122
[OBAB] human gut metagenome; faeces
177
249
+
Thr
TGT
[ENA]
¢þ
>WENV180446720
OBXC01000756
[OBXC] human gut metagenome; faeces
20212
20140
-
Thr
TGT
[ENA]
¢þ
>WENV180446786
OBXC01001289
[OBXC] human gut metagenome; faeces
1787
1715
-
Thr
TGT
[ENA]
¢þ
>WENV180447217
OBXC01025490
[OBXC] human gut metagenome; faeces
78
150
+
Thr
TGT
[ENA]
¢þ
>WENV180455471
OBXO01004940
[OBXO] human gut metagenome; faeces
3057
2985
-
Thr
TGT
[ENA]
¢þ
>WENV180455624
OBXO01015395
[OBXO] human gut metagenome; faeces
161
233
+
Thr
TGT
[ENA]
¢þ
>WENV180455796
OBXO01048725
[OBXO] human gut metagenome; faeces
74
2
-
Thr
TGT
[ENA]
¢þ
>WENV182409645
OIFJ01000071
[OIFJ] human gut metagenome; stool
2212
2140
-
Thr
TGT
[ENA]
¢þ
>WENV182409824
OIFJ01000406
[OIFJ] human gut metagenome; stool
16032
15957
-
Thr
TGT
[ENA]
¢þ
>C08003671
CP000885
Bacillota
Lachnoclostridium phytofermentans ISDg [CP000885]
21189
21261
+
Thr
TGT
[Ensembl]
¡û
>C08003689
CP000885
Bacillota
Lachnoclostridium phytofermentans ISDg [CP000885]
451645
451717
+
Thr
TGT
[Ensembl]
¡û
>WENV182601490
OJJJ01000012
[OJJJ] metagenome; faeces
443
515
+
Thr
TGT
[ENA]
¢þ
>WENV182601607
OJJJ01000108
[OJJJ] metagenome; faeces
488
560
+
Thr
TGT
[ENA]
¢þ
>WENV182602109
OJJJ01011958
[OJJJ] metagenome; faeces
741
813
+
Thr
TGT
[ENA]
¢þ
>WENV182961820
OKWL01000425
[OKWL] human gut metagenome; stool
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182961882
OKWL01001455
[OKWL] human gut metagenome; stool
2148
2076
-
Thr
TGT
[ENA]
¢þ
>WENV182962542
OKWN01003340
[OKWN] human gut metagenome; stool
237
309
+
Thr
TGT
[ENA]
¢þ
>WENV182962545
OKWN01003596
[OKWN] human gut metagenome; stool
1360
1432
+
Thr
TGT
[ENA]
¢þ
>WENV182965855
OKWT01000551
[OKWT] human gut metagenome; stool
3807
3732
-
Thr
TGT
[ENA]
¢þ
>WENV182965880
OKWT01000821
[OKWT] human gut metagenome; stool
2148
2076
-
Thr
TGT
[ENA]
¢þ
>WENV170012573
ASRL01003158
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
148
76
-
Thr
TGT
[ENA]
¢þ
>WENV170012811
ASRO01005254
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
177
249
+
Thr
TGT
[ENA]
¢þ
>WENV170014509
AYRG01005331
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
255
183
-
Thr
TGT
[ENA]
¢þ
>WENV170785056
MDSP01000025
[MDSP] gut metagenome; Stomach gut content
35192
35120
-
Thr
TGT
[ENA]
¢þ
>WENV170785063
MDSP01000029
[MDSP] gut metagenome; Stomach gut content
490
562
+
Thr
TGT
[ENA]
¢þ
>WENV170785067
MDSP01000029
[MDSP] gut metagenome; Stomach gut content
869
941
+
Thr
TGT
[ENA]
¢þ
>WENV170785084
MDSP01000082
[MDSP] gut metagenome; Stomach gut content
712
784
+
Thr
TGT
[ENA]
¢þ
>WENV170785094
MDSP01000121
[MDSP] gut metagenome; Stomach gut content
16742
16670
-
Thr
TGT
[ENA]
¢þ
>WENV170785182
MDSP01001145
[MDSP] gut metagenome; Stomach gut content
4784
4712
-
Thr
TGT
[ENA]
¢þ
>WENV170785329
MDSP01020332
[MDSP] gut metagenome; Stomach gut content
496
568
+
Thr
TGT
[ENA]
¢þ
>WENV170785400
MDSP01034501
[MDSP] gut metagenome; Stomach gut content
120
48
-
Thr
TGT
[ENA]
¢þ
>WENV170785654
MDSP01236825
[MDSP] gut metagenome; Stomach gut content
127
199
+
Thr
TGT
[ENA]
¢þ
>WENV170785663
MDSP01246478
[MDSP] gut metagenome; Stomach gut content
364
436
+
Thr
TGT
[ENA]
¢þ
>C191012350
CP016379
Bacillota
Anoxybacter fermentans DY22613 [CP016379]
686002
685927
-
Thr
TGT
-
¡û
>C191012355
CP016379
Bacillota
Anoxybacter fermentans DY22613 [CP016379]
674566
674491
-
Thr
TGT
-
¡û
>C191012358
CP016379
Bacillota
Anoxybacter fermentans DY22613 [CP016379]
673362
673287
-
Thr
TGT
-
¡û
>C191128866
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
672638
672710
+
Thr
TGT
-
¡û
>C191128890
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
831427
831499
+
Thr
TGT
-
¡û
>C191128941
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
4369941
4369869
-
Thr
TGT
-
¡û
>C191128948
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
4369229
4369157
-
Thr
TGT
-
¡û
>W141733823
JNLE01000003
Bacillota
Clostridium sp. KNHs205 [JNLE]
481697
481769
+
Thr
TGT
[ENA]
¡û
>W141733838
JNLE01000003
Bacillota
Clostridium sp. KNHs205 [JNLE]
979884
979956
+
Thr
TGT
[ENA]
¡û
>W141734000
JNLG01000001
Bacillota
Lachnoclostridium phytofermentans KNHs2132 [JNLG]
1267242
1267170
-
Thr
TGT
[ENA]
¡û
>W141734018
JNLG01000001
Bacillota
Lachnoclostridium phytofermentans KNHs2132 [JNLG]
716716
716644
-
Thr
TGT
[ENA]
¡û
>W141734301
JNLM01000001
Bacillota
Lachnoclostridium phytofermentans KNHs212 [JNLM]
1728102
1728030
-
Thr
TGT
[ENA]
¡û
>W141734319
JNLM01000001
Bacillota
Lachnoclostridium phytofermentans KNHs212 [JNLM]
1177614
1177542
-
Thr
TGT
[ENA]
¡û
>W141807150
JPOF01000001
Bacillota
Lachnoclostridium phytofermentans [JPOF]
292923
292995
+
Thr
TGT
[ENA]
¡û
>W141807177
JPOF01000003
Bacillota
Lachnoclostridium phytofermentans [JPOF]
1502159
1502231
+
Thr
TGT
[ENA]
¡û
>W1910217660
FMMP01000007
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
375873
375801
-
Thr
TGT
[ENA]
¡û
>W1910217690
FMMP01000016
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
196486
196414
-
Thr
TGT
[ENA]
¡û
>W1910217697
FMMP01000016
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
195549
195477
-
Thr
TGT
[ENA]
¡û
>W1810071101
PEDL01000016
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
89966
89894
-
Thr
TGT
[ENA]
¡û
>W1810071108
PEDL01000016
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
89160
89088
-
Thr
TGT
[ENA]
¡û
>W1810071119
PEDL01000030
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
544
616
+
Thr
TGT
[ENA]
¡û
>C11105510
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
15685
15757
+
Thr
TGT
[Ensembl]
¡û
>C11105534
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
173682
173754
+
Thr
TGT
[Ensembl]
¡û
>C11105587
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3620385
3620313
-
Thr
TGT
[Ensembl]
¡û
>C11105594
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3619677
3619605
-
Thr
TGT
[Ensembl]
¡û
>W1510725186
CXYW01000002
Bacillota
Niameybacter massiliensis mt14 [CXYW]
16680
16606
-
Thr
TGT
[ENA]
¡û
>W1510725213
CXYW01000008
Bacillota
Niameybacter massiliensis mt14 [CXYW]
28486
28411
-
Thr
TGT
[ENA]
¡û
>W1510725266
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1793983
1793908
-
Thr
TGT
[ENA]
¡û
>W1510725273
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1793304
1793232
-
Thr
TGT
[ENA]
¡û
>W1510725295
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
381668
381596
-
Thr
TGT
[ENA]
¡û
>W1610547818
JWID01000023
Bacillota
Defluviitalea phaphyphila [JWID]
17172
17097
-
Thr
TGT
[ENA]
¡û
>W1610547831
JWID01000036
Bacillota
Defluviitalea phaphyphila [JWID]
303
375
+
Thr
TGT
[ENA]
¡û
>W1710593645
FRFD01000017
Bacillota
Anaerocolumna xylanovorans DSM 12503 [FRFD]
106093
106021
-
Thr
TGT
[ENA]
¡û
>W1710593664
FRFD01000021
Bacillota
Anaerocolumna xylanovorans DSM 12503 [FRFD]
557
629
+
Thr
TGT
[ENA]
¡û
>W1710651194
JWID01000023
Bacillota
Defluviitalea phaphyphila [JWID]
17172
17097
-
Thr
TGT
[ENA]
¡û
>W1710651207
JWID01000036
Bacillota
Defluviitalea phaphyphila [JWID]
303
375
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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