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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277230 (24 seq.)
>W131164982
ARBF01000075
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
239632
239707
+
Thr
CGT
[ENA]
¡û
>W131186384
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
288252
288177
-
Thr
CGT
[ENA]
¡û
>W131228547
AUGA01000016
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
5140
5065
-
Thr
CGT
[ENA]
¡û
>WENV181162575
OEIO01001343
[OEIO] marine metagenome; sea ice
1240
1315
+
Thr
CGT
[ENA]
¡û
>W141150353
AXAI01000003
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
346834
346909
+
Thr
CGT
[ENA]
¡û
>W141151210
AXAW01000039
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
49961
49886
-
Thr
CGT
[ENA]
¡û
>W141169208
AXVP01000063
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
12729
12654
-
Thr
CGT
[ENA]
¡û
>W141278124
JAFC01000029
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
118137
118212
+
Thr
CGT
[ENA]
¡û
>W2010827259
MDEP01000039
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
102222
102297
+
Thr
CGT
[ENA]
¡û
>W2011219828
PSRS01000318
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
5351
5426
+
Thr
CGT
[ENA]
¡û
>W2110500502
JAFICZ010000001
Alphaproteobacteria
Bradyrhizobium elkanii USDA 406 [JAFICZ]
2105917
2105842
-
Thr
CGT
[ENA]
¡û
>C211035721
CP030036
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 21365 [CP030036]
315660
315735
+
Thr
CGT
-
¡û
>C231102336
CP064698
Alphaproteobacteria
Bradyrhizobium sp. 183 [CP064698]
68165
68240
+
Thr
CGT
-
¡û
>C231102382
CP064701
Alphaproteobacteria
Bradyrhizobium sp. 172 [CP064701]
68159
68234
+
Thr
CGT
-
¡û
>C231173141
CP082161
Alphaproteobacteria
Bradyrhizobium sp. 195 [CP082161]
8237514
8237439
-
Thr
CGT
-
¡û
>C231546117
CP113162
Alphaproteobacteria
[Pseudomonas] carboxydohydrogena DSM 1083 [CP113162]
274093
274168
+
Thr
CGT
-
¡û
>C241000046
AP013103
Alphaproteobacteria
Bradyrhizobium elkanii USDA 61 [AP013103]
731349
731274
-
Thr
CGT
-
¡û
>C241090257
CP044543
Alphaproteobacteria
Bradyrhizobium betae PL7HG1 [CP044543]
3304395
3304470
+
Thr
CGT
-
¡û
>C241188044
CP094515
Alphaproteobacteria
Bradyrhizobium sp. ISRA426 [CP094515]
283363
283438
+
Thr
CGT
-
¡û
>C241188138
CP094517
Alphaproteobacteria
Bradyrhizobium sp. ISRA432 [CP094517]
283363
283438
+
Thr
CGT
-
¡û
>C241244676
CP121634
Alphaproteobacteria
Bradyrhizobium sp. CIAT3101 [CP121634]
393769
393844
+
Thr
CGT
-
¡û
>C241357097
CP140754
Alphaproteobacteria
Bradyrhizobium ottawaense MIAE01942_C633 [CP140754]
747722
747647
-
Thr
CGT
-
¡û
>C121000709
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
278048
278123
+
Thr
CGT
[Ensembl]
¡û
>C161107913
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
851338
851413
+
Thr
CGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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