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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277340 (109 seq.)
>W1710875360
LMOI01000010
Actinomycetota
Arthrobacter sp. Leaf137 [LMOI]
20792
20716
-
Thr
TGT
[ENA]
¡û
>W1710875612
LMON01000009
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
19780
19704
-
Thr
TGT
[ENA]
¡û
>W1710876301
LMPC01000019
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
18343
18419
+
Thr
TGT
[ENA]
¡û
>W1710880027
LMSB01000013
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
26472
26548
+
Thr
TGT
[ENA]
¡û
>W1710880269
LMSF01000017
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
11510
11586
+
Thr
TGT
[ENA]
¡û
>W1710880389
LMSH01000007
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
51162
51086
-
Thr
TGT
[ENA]
¡û
>W1710880399
LMSI01000011
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
24753
24677
-
Thr
TGT
[ENA]
¡û
>W1710880746
LMSO01000003
Actinomycetota
Arthrobacter sp. Soil782 [LMSO]
8883
8959
+
Thr
TGT
[ENA]
¡û
>W1710909463
LNQM01000014
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
15015
14939
-
Thr
TGT
[ENA]
¡û
>W1710916218
LNUV01000006
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
429720
429796
+
Thr
TGT
[ENA]
¡û
>W1711184053
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
1012487
1012563
+
Thr
TGT
[ENA]
¡û
>W1711724066
MTPV01000028
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
113261
113187
-
Thr
TGT
[ENA]
¡û
>W1711768835
MVDG01000071
Actinomycetota
Arthrobacter sp. KBS0703 [MVDG]
11228
11152
-
Thr
TGT
[ENA]
¡û
>W1711853239
MYFE01000493
Actinomycetota
Arthrobacter globiformis [MYFE]
780
854
+
Thr
TGT
[ENA]
¡û
>W1712049469
NFSC01000017
Actinomycetota
Arthrobacter agilis [NFSC]
10108
10032
-
Thr
TGT
[ENA]
¡û
>W1712049551
NFSD01000034
Actinomycetota
Arthrobacter agilis [NFSD]
597683
597607
-
Thr
TGT
[ENA]
¡û
>W131089952
AOFD01000062
Actinomycetota
Arthrobacter nitrophenolicus SJCon [AOFD]
12083
12159
+
Thr
TGT
[ENA]
¡û
>W131172040
ARGQ01000031
Actinomycetota
Arthrobacter sp. 135MFCol5.1 [ARGQ]
11702
11778
+
Thr
TGT
[ENA]
¡û
>W131172151
ARGS01000022
Actinomycetota
Arthrobacter sp. 162MFSha1.1 [ARGS]
20413
20337
-
Thr
TGT
[ENA]
¡û
>W131172251
ARGU01000025
Actinomycetota
Arthrobacter sp. 161MFSha2.1 [ARGU]
31495
31571
+
Thr
TGT
[ENA]
¡û
>C171092017
CP019304
Actinomycetota
Arthrobacter sp. QXT-31 [CP019304]
1474790
1474716
-
Thr
TGT
-
¡û
>C000051
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
992133
992209
+
Thr
TGT
[Ensembl]
¡û
>C000991
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
816148
816224
+
Thr
TGT
[Ensembl]
¡û
>WENV180017265
FSWR01000032
[FSWR] metagenome; soil
146915
146841
-
Thr
TGT
[ENA]
¢þ
>WENV180018447
FSZH01000239
[FSZH] metagenome; soil
1125
1199
+
Thr
TGT
[ENA]
¢þ
>WENV180019660
FTCF01000427
[FTCF] metagenome; soil
105
179
+
Thr
TGT
[ENA]
¢þ
>WENV180023988
FTIF01006139
[FTIF] metagenome; soil
12852
12926
+
Thr
TGT
[ENA]
¢þ
>W141065993
AQRI01000011
Actinomycetota
Arthrobacter sp. MA-N2 [AQRI]
9496
9572
+
Thr
TGT
[ENA]
¡û
>WENV180695669
OCZS013794540
[OCZS] soil metagenome; soil
84
160
+
Thr
TGT
[ENA]
¢þ
>WENV181166459
OEIU01000343
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
36696
36622
-
Thr
TGT
[ENA]
¢þ
>WENV181191274
OEPS010048897
[OEPS] soil metagenome; soil
132
208
+
Thr
TGT
[ENA]
¢þ
>WENV181222693
OFDC01000095
[OFDC] hot springs metagenome; Water
85166
85242
+
Thr
TGT
[ENA]
¢þ
>W08008068
ABKU01000050
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
12595
12522
-
Thr
TGT
[ENA]
¡û
>W141203172
AZHY01000051
Actinomycetota
Arthrobacter sp. 35/47 [AZHY]
454
378
-
Thr
TGT
[ENA]
¡û
>W141216753
AZVC01000021
Actinomycetota
Paenarthrobacter nicotinovorans 231Sha2.1M6 [AZVC]
26379
26455
+
Thr
TGT
[ENA]
¡û
>W141217171
AZVJ01000024
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
26384
26460
+
Thr
TGT
[ENA]
¡û
>W141246982
CAQI01000050
Actinomycetota
Pseudarthrobacter siccitolerans [CAQI]
1203
1127
-
Thr
TGT
[ENA]
¡û
>W141278861
JAFW01000001
Actinomycetota
Arthrobacter sp. 31Y [JAFW]
3381787
3381863
+
Thr
TGT
[ENA]
¡û
>WENV183728950
PJTQ01001396
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
5803
5727
-
Thr
TGT
[ENA]
¢þ
>C181064956
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
1024475
1024551
+
Thr
TGT
-
¡û
>W09102046
AAHG01000005
Actinomycetota
Arthrobacter sp. FB24 [AAHG]
330259
330183
-
Thr
TGT
[ENA]
¡û
>C181134205
CP026514
Actinomycetota
Arthrobacter sp. PGP41 [CP026514]
755816
755890
+
Thr
TGT
-
¡û
>C181144000
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
323909
323833
-
Thr
TGT
-
¡û
>C191004129
AP018697
Actinomycetota
Arthrobacter sp. MN05-02 [AP018697]
584411
584487
+
Thr
TGT
-
¡û
>C191174043
CP040018
Actinomycetota
Arthrobacter sp. 24S4-2 [CP040018]
888553
888628
+
Thr
TGT
-
¡û
>C191188260
CP041187
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502771 [CP041187]
223011
222935
-
Thr
TGT
-
¡û
>C191188512
CP041198
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502770 [CP041198]
228624
228700
+
Thr
TGT
-
¡û
>C191193408
LR131272
Actinomycetota
Arthrobacter agilis NCTC2676_1 [LR131272]
505715
505791
+
Thr
TGT
-
¡û
>W141702024
JMLE01000013
Actinomycetota
Arthrobacter sp. UNC362MFTsu5.1 [JMLE]
122624
122548
-
Thr
TGT
[ENA]
¡û
>W1910181600
BJMD01000025
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
32395
32319
-
Thr
TGT
[ENA]
¡û
>C09100256
CP001341
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [CP001341]
956805
956881
+
Thr
TGT
[Ensembl]
¡û
>W1911566822
PCPC01000037
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
25799
25875
+
Thr
TGT
[ENA]
¡û
>W1911567594
PCPR01000038
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
727
651
-
Thr
TGT
[ENA]
¡û
>W1810167262
PJII01000011
Actinomycetota
Arthrobacter sp. ZGTC412 [PJII]
11634
11709
+
Thr
TGT
[ENA]
¡û
>W1810167371
PJIK01000027
Actinomycetota
Arthrobacter sp. ZGTC131 [PJIK]
12235
12311
+
Thr
TGT
[ENA]
¡û
>W1810167420
PJIL01000032
Actinomycetota
Arthrobacter sp. Y81 [PJIL]
12215
12289
+
Thr
TGT
[ENA]
¡û
>W1810167461
PJIM01000003
Actinomycetota
Arthrobacter sp. SX1312 [PJIM]
676460
676384
-
Thr
TGT
[ENA]
¡û
>W1810167613
PJIP01000017
Actinomycetota
Arthrobacter sp. DWC3 [PJIP]
39817
39741
-
Thr
TGT
[ENA]
¡û
>W1810167623
PJIQ01000003
Actinomycetota
Arthrobacter sp. B1805 [PJIQ]
295809
295733
-
Thr
TGT
[ENA]
¡û
>W1810167687
PJIR01000006
Actinomycetota
Arthrobacter sp. B0490 [PJIR]
193898
193823
-
Thr
TGT
[ENA]
¡û
>W1810169224
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
1107190
1107266
+
Thr
TGT
[ENA]
¡û
>W1810171986
PJMB01000014
Actinomycetota
Arthrobacter sp. AFG7.2 [PJMB]
62593
62517
-
Thr
TGT
[ENA]
¡û
>W1810172024
PJMC01000011
Actinomycetota
Arthrobacter sp. AFG20 [PJMC]
13719
13793
+
Thr
TGT
[ENA]
¡û
>W1810240419
PPTH01000014
Actinomycetota
Arthrobacter ruber MDB1-42 [PPTH]
330696
330620
-
Thr
TGT
[ENA]
¡û
>W1810271402
PRKW01000007
Actinomycetota
Arthrobacter pityocampae Tp2 [PRKW]
7975
8051
+
Thr
TGT
[ENA]
¡û
>W1810271446
PRKX01000029
Actinomycetota
Arthrobacter agilis CGMCC 1.15723 [PRKX]
608198
608122
-
Thr
TGT
[ENA]
¡û
>W1810296179
PTJB01000028
Actinomycetota
Arthrobacter sp. B3 [PTJB]
12556
12632
+
Thr
TGT
[ENA]
¡û
>W1810569986
QEHL01000022
Actinomycetota
Pseudarthrobacter sp. AG30 [QEHL]
64833
64757
-
Thr
TGT
[ENA]
¡û
>W1810676832
QKMG01000018
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
27700
27624
-
Thr
TGT
[ENA]
¡û
>W1810677248
QKMO01000006
Actinomycetota
Arthrobacter sp. RC1.1 241 [QKMO]
178345
178271
-
Thr
TGT
[ENA]
¡û
>W1810695559
QLNP01000080
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
11723
11799
+
Thr
TGT
[ENA]
¡û
>W1810789435
QRGQ01000005
Actinomycetota
Arthrobacter sp. RT-1 [QRGQ]
12891
12967
+
Thr
TGT
[ENA]
¡û
>W1510018504
BBUD01000393
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
2269
2195
-
Thr
TGT
[ENA]
¡û
>C11100989
CP002379
Actinomycetota
Pseudarthrobacter phenanthrenivorans Sphe3 [CP002379]
825853
825929
+
Thr
TGT
[Ensembl]
¡û
>W1510641742
CVLG01000001
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
1350426
1350502
+
Thr
TGT
[ENA]
¡û
>W1511319611
JPZK01000014
Actinomycetota
Arthrobacter sp. MWB30 [JPZK]
31411
31487
+
Thr
TGT
[ENA]
¡û
>W1511489613
JWTB01000014
Actinomycetota
Pseudarthrobacter phenanthrenivorans SWC37 [JWTB]
11408
11482
+
Thr
TGT
[ENA]
¡û
>W1511523710
JYCN01000009
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
18543
18619
+
Thr
TGT
[ENA]
¡û
>W1511551648
JZTW01000031
Actinomycetota
Pseudarthrobacter chlorophenolicus Mor30.16 [JZTW]
12282
12206
-
Thr
TGT
[ENA]
¡û
>W1511699837
LGIU01000016
Actinomycetota
Arthrobacter sp. RIT-PI-e [LGIU]
24337
24263
-
Thr
TGT
[ENA]
¡û
>W121086827
AKKK01000038
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
43472
43396
-
Thr
TGT
[ENA]
¡û
>W121123789
BAEG01000012
Actinomycetota
Arthrobacter globiformis NBRC 12137 [BAEG]
12454
12530
+
Thr
TGT
[ENA]
¡û
>W1610050305
BBFS01000008
Actinomycetota
Paenarthrobacter nitroguajacolicus JCM 14115 [BBFS]
31665
31741
+
Thr
TGT
[ENA]
¡û
>W1610081912
BDDW01000021
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
36882
36958
+
Thr
TGT
[ENA]
¡û
>C131002300
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
947648
947724
+
Thr
TGT
[Ensembl]
¡û
>W1610515445
FMAZ01000013
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
15015
14939
-
Thr
TGT
[ENA]
¡û
>W1610737706
LMOI01000010
Actinomycetota
Arthrobacter sp. Leaf137 [LMOI]
20792
20716
-
Thr
TGT
[ENA]
¡û
>W1610737958
LMON01000009
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
19780
19704
-
Thr
TGT
[ENA]
¡û
>W1610738647
LMPC01000019
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
18343
18419
+
Thr
TGT
[ENA]
¡û
>W1610742373
LMSB01000013
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
26472
26548
+
Thr
TGT
[ENA]
¡û
>W1610742615
LMSF01000017
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
11510
11586
+
Thr
TGT
[ENA]
¡û
>W1610742735
LMSH01000007
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
51162
51086
-
Thr
TGT
[ENA]
¡û
>W1610742745
LMSI01000011
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
24753
24677
-
Thr
TGT
[ENA]
¡û
>W1610743092
LMSO01000003
Actinomycetota
Arthrobacter sp. Soil782 [LMSO]
8883
8959
+
Thr
TGT
[ENA]
¡û
>W1610767822
LNQM01000014
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
15015
14939
-
Thr
TGT
[ENA]
¡û
>W1610774457
LNUV01000006
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
429720
429796
+
Thr
TGT
[ENA]
¡û
>W1610989935
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
1012487
1012563
+
Thr
TGT
[ENA]
¡û
>W1710046704
BBFS01000008
Actinomycetota
Paenarthrobacter nitroguajacolicus JCM 14115 [BBFS]
31665
31741
+
Thr
TGT
[ENA]
¡û
>W1710080627
BDDW01000021
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
36882
36958
+
Thr
TGT
[ENA]
¡û
>W1710501135
FMAZ01000013
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
15015
14939
-
Thr
TGT
[ENA]
¡û
>W1710508532
FMWE01000015
Actinomycetota
Arthrobacter sp. UNCCL28 [FMWE]
7001
6925
-
Thr
TGT
[ENA]
¡û
>W1710518047
FNDT01000005
Actinomycetota
Arthrobacter subterraneus [FNDT]
222260
222184
-
Thr
TGT
[ENA]
¡û
>W1710527672
FNLE01000003
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
4230523
4230447
-
Thr
TGT
[ENA]
¡û
>W1710529034
FNNR01000016
Actinomycetota
Arthrobacter sp. cf158 [FNNR]
7166
7090
-
Thr
TGT
[ENA]
¡û
>W1710541473
FNYI01000015
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
31806
31882
+
Thr
TGT
[ENA]
¡û
>W1710550073
FOEZ01000003
Actinomycetota
Arthrobacter sp. OV608 [FOEZ]
11713
11789
+
Thr
TGT
[ENA]
¡û
>W1710577649
FPAY01000012
Actinomycetota
Arthrobacter sp. ov118 [FPAY]
9877
9953
+
Thr
TGT
[ENA]
¡û
>W1710603464
FUZB01000021
Actinomycetota
Arthrobacter sp. 31Cvi3.1E [FUZB]
31534
31610
+
Thr
TGT
[ENA]
¡û
>W1710605042
FVZL01000009
Actinomycetota
Arthrobacter sp. P2b [FVZL]
137826
137750
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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