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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277601 (87 seq.)
>W131191163
ASHR01000032
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
60953
61028
+
His
GTG
[ENA]
¡û
>W131216958
ATWH01000012
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
57932
58007
+
His
GTG
[ENA]
¡û
>W131234884
AULD01000006
Actinomycetota
Agrococcus lahaulensis DSM 17612 [AULD]
111496
111570
+
His
GTG
[ENA]
¡û
>W131184625
ARTB01000001
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
373063
372988
-
His
GTG
[ENA]
¡û
>WENV180394444
OBPS01005755
[OBPS] marine metagenome; ENVO:00002010 seawater
630
705
+
His
GTG
[ENA]
¡û
>WENV180395280
OBPT01005911
[OBPT] marine metagenome; ENVO:00002010 seawater
1765
1840
+
His
GTG
[ENA]
¡û
>WENV180399812
OBQO01043897
[OBQO] marine metagenome; ENVO:00002010
455
381
-
His
GTG
[ENA]
¡û
>WENV181126437
OEFV01085884
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
92
17
-
His
GTG
[ENA]
¡û
>WENV181325750
OFLJ01021326
[OFLJ] seawater metagenome; seawater
437
511
+
His
GTG
[ENA]
¡û
>WENV182540371
OJAH01006939
[OJAH] seawater metagenome; Sea water
151
77
-
His
GTG
[ENA]
¡û
>WENV182540469
OJAJ01002834
[OJAJ] seawater metagenome; Sea water
386
460
+
His
GTG
[ENA]
¡û
>WENV182540832
OJAQ01000022
[OJAQ] seawater metagenome; Sea water
2506
2580
+
His
GTG
[ENA]
¡û
>WENV182542721
OJAZ01001138
[OJAZ] seawater metagenome; Sea water
7930
7856
-
His
GTG
[ENA]
¡û
>WENV182544241
OJBF01000061
[OJBF] seawater metagenome; Sea water
1067
1141
+
His
GTG
[ENA]
¡û
>WENV182544540
OJBG01019522
[OJBG] seawater metagenome; Sea water
412
486
+
His
GTG
[ENA]
¡û
>WENV182545042
OJBL01005554
[OJBL] seawater metagenome; Sea water
287
213
-
His
GTG
[ENA]
¡û
>WENV182545453
OJBN01003345
[OJBN] seawater metagenome; Sea water
1417
1343
-
His
GTG
[ENA]
¡û
>WENV182548516
OJBW01001240
[OJBW] seawater metagenome; Sea water
2113
2039
-
His
GTG
[ENA]
¡û
>WENV182550240
OJBZ01017599
[OJBZ] seawater metagenome; Sea water
377
451
+
His
GTG
[ENA]
¡û
>WENV182553214
OJCR01000563
[OJCR] seawater metagenome; Sea water
5079
5153
+
His
GTG
[ENA]
¡û
>WENV182554060
OJCT01000223
[OJCT] seawater metagenome; Sea water
1358
1432
+
His
GTG
[ENA]
¡û
>WENV182557239
OJDI01003142
[OJDI] seawater metagenome; Sea water
659
733
+
His
GTG
[ENA]
¡û
>WENV182561619
OJDX01000108
[OJDX] seawater metagenome; Sea water
1163
1237
+
His
GTG
[ENA]
¡û
>WENV182561888
OJDY01000001
[OJDY] seawater metagenome; Sea water
217249
217323
+
His
GTG
[ENA]
¡û
>WENV182562653
OJEA01000009
[OJEA] seawater metagenome; Sea water
46851
46777
-
His
GTG
[ENA]
¡û
>WENV182563043
OJEB01000012
[OJEB] seawater metagenome; Sea water
36135
36061
-
His
GTG
[ENA]
¡û
>WENV182564015
OJEE01000002
[OJEE] seawater metagenome; Sea water
94705
94779
+
His
GTG
[ENA]
¡û
>WENV182569007
OJEY01000016
[OJEY] seawater metagenome; Sea water
9497
9571
+
His
GTG
[ENA]
¡û
>WENV182569736
OJFB01000166
[OJFB] seawater metagenome; Sea water
2052
2126
+
His
GTG
[ENA]
¡û
>WENV182571090
OJFG01000337
[OJFG] seawater metagenome; Sea water
13514
13440
-
His
GTG
[ENA]
¡û
>WENV182573753
OJFP01024921
[OJFP] seawater metagenome; Sea water
404
330
-
His
GTG
[ENA]
¡û
>WENV182574625
OJFS01000168
[OJFS] seawater metagenome; Sea water
29348
29274
-
His
GTG
[ENA]
¡û
>WENV182576568
OJFY01000132
[OJFY] seawater metagenome; Sea water
3062
3136
+
His
GTG
[ENA]
¡û
>WENV182577972
OJGM01000140
[OJGM] seawater metagenome; Sea water
3763
3689
-
His
GTG
[ENA]
¡û
>WENV182580811
OJGW01014538
[OJGW] seawater metagenome; Sea water
1179
1253
+
His
GTG
[ENA]
¡û
>WENV182582081
OJHA01000004
[OJHA] seawater metagenome; Sea water
39086
39012
-
His
GTG
[ENA]
¡û
>WENV182582401
OJHB01000032
[OJHB] seawater metagenome; Sea water
8302
8376
+
His
GTG
[ENA]
¡û
>WENV182583278
OJHD01001968
[OJHD] seawater metagenome; Sea water
354
428
+
His
GTG
[ENA]
¡û
>WENV182586703
OJHK01003267
[OJHK] seawater metagenome; Sea water
4207
4133
-
His
GTG
[ENA]
¡û
>WENV182587530
OJHN01000004
[OJHN] seawater metagenome; Sea water
84779
84705
-
His
GTG
[ENA]
¡û
>WENV182592345
OJIR01000057
[OJIR] seawater metagenome; Sea water
6116
6190
+
His
GTG
[ENA]
¡û
>WENV183053670
OLGP01000808
[OLGP] seawater metagenome; Sea water
788
862
+
His
GTG
[ENA]
¡û
>WENV183054487
OLGU01000001
[OLGU] seawater metagenome; Sea water
172185
172259
+
His
GTG
[ENA]
¡û
>WENV183059062
OLHS01002413
[OLHS] seawater metagenome; Sea water
104
178
+
His
GTG
[ENA]
¡û
>WENV183059207
OLHU01000009
[OLHU] seawater metagenome; Sea water
3367
3441
+
His
GTG
[ENA]
¡û
>WENV183060172
OLHX01000008
[OLHX] seawater metagenome; Sea water
29201
29127
-
His
GTG
[ENA]
¡û
>WENV183061052
OLHY01034685
[OLHY] seawater metagenome; Sea water
314
240
-
His
GTG
[ENA]
¡û
>WENV183619596
OOFQ01021706
[OOFQ] marine metagenome; seawater
437
511
+
His
GTG
[ENA]
¡û
>WENV170568174
FLMP01020862
[FLMP] seawater metagenome; seawater
741
666
-
His
GTG
[ENA]
¡û
>WENV170570782
FLOH01000022
[FLOH] marine metagenome; water
235166
235091
-
His
GTG
[ENA]
¡û
>WENV170571402
FLOH01000149
[FLOH] marine metagenome; water
190202
190127
-
His
GTG
[ENA]
¡û
>WENV170626758
FUWD013229316
[FUWD] metagenome; unknown
291
216
-
His
GTG
[ENA]
¡û
>WENV170626802
FUWD013229608
[FUWD] metagenome; unknown
3541
3466
-
His
GTG
[ENA]
¡û
>WENV170627138
FUWD013231607
[FUWD] metagenome; unknown
28733
28658
-
His
GTG
[ENA]
¡û
>WENV170629414
FUWD013269738
[FUWD] metagenome; unknown
8797
8872
+
His
GTG
[ENA]
¡û
>WENV170629415
FUWD013269738
[FUWD] metagenome; unknown
16416
16491
+
His
GTG
[ENA]
¡û
>WENV170631794
FUWD013365724
[FUWD] metagenome; unknown
235123
235048
-
His
GTG
[ENA]
¡û
>WENV170949916
MEHZ011464478
[MEHZ] marine metagenome; marine surface water
3
78
+
His
GTG
[ENA]
¡û
>WENV170953222
MEHZ011634688
[MEHZ] marine metagenome; marine surface water
49966
49891
-
His
GTG
[ENA]
¡û
>C181143930
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1834659
1834734
+
His
GTG
-
¡û
>SRA1016847
SRR035082.41814
454 Sequencing (SRP001803)
111
186
+
His
GTG
[SRA]
>SRA1029516
SRR035087.140044
454 Sequencing (SRP001808)
426
501
+
His
GTG
[SRA]
>W2010099815
BJUU01000001
Actinomycetota
Agrococcus baldri NBRC 103055 [BJUU]
57087
57161
+
His
GTG
[ENA]
¡û
>SRA1036719
SRR035089.592450
454 Sequencing (SRP001810)
267
192
-
His
GTG
[SRA]
>W2010675150
JACCFV010000001
Actinomycetota
Pseudoclavibacter chungangensis DSM 23821 [JACCFV]
2335653
2335727
+
His
GTG
[ENA]
¡û
>W2011403439
RCUV01000007
Actinomycetota
Mycetocola manganoxydans CCTCC AB209002 [RCUV]
62829
62754
-
His
GTG
[ENA]
¡û
>SRA1047314
SRR035093.508206
454 Sequencing (SRP001814)
303
378
+
His
GTG
[SRA]
>W2011692134
SSSN01000003
Actinomycetota
Glaciibacter sp. YIM 131861 [SSSN]
201297
201222
-
His
GTG
[ENA]
¡û
>W2012039236
VIKT02000005
Actinomycetota
Chryseoglobus sp. KN1116 [VIKT]
145309
145234
-
His
GTG
[ENA]
¡û
>SRA1052132
SRR035098.147143
454 Sequencing (SRP001819)
202
277
+
His
GTG
[SRA]
>SRA1052711
SRR035098.256525
454 Sequencing (SRP001819)
202
277
+
His
GTG
[SRA]
>SRA1052888
SRR035098.292754
454 Sequencing (SRP001819)
337
262
-
His
GTG
[SRA]
>SRA1052988
SRR035098.314718
454 Sequencing (SRP001819)
201
276
+
His
GTG
[SRA]
>SRA1053003
SRR035098.317226
454 Sequencing (SRP001819)
202
277
+
His
GTG
[SRA]
>W2012228465
WBJZ01000010
Actinomycetota
Pseudoclavibacter chungangensis DSM 23821 [WBJZ]
123744
123818
+
His
GTG
[ENA]
¡û
>W2110030378
BMLM01000001
Actinomycetota
Agrococcus terreus CGMCC 1.6960 [BMLM]
1317724
1317649
-
His
GTG
[ENA]
¡û
>W2110522584
JAGEKO010000001
Actinomycetota
Agrococcus sp. TF02-5 [JAGEKO]
447824
447899
+
His
GTG
[ENA]
¡û
>C201298239
CP058670
Actinomycetota
Chryseoglobus sp. CTD02-10-2 [CP058670]
1781799
1781874
+
His
GTG
-
¡û
>C211154321
CP061846
Actinomycetota
Chryseoglobus sp. 28M-23 [CP061846]
1782522
1782597
+
His
GTG
-
¡û
>C211277210
CP070501
Actinomycetota
Agrococcus sp. Marseille-Q4369 [CP070501]
231931
231856
-
His
GTG
-
¡û
>C231345602
CP094528
Actinomycetota
Agromyces sp. CFWR-12 [CP094528]
1296793
1296868
+
His
GTG
-
¡û
>C231355421
CP095042
Actinomycetota
Agromyces sp. H17E-10 [CP095042]
3739872
3739797
-
His
GTG
-
¡û
>C241148477
CP051154
Actinomycetota
Leifsonia sp. PS1209 [CP051154]
1873438
1873363
-
His
GTG
-
¡û
>C161061364
CP013859
Actinomycetota
Microbacterium sp. XT11 [CP013859]
2529548
2529475
-
His
GTG
[Ensembl]
¡û
>C161063221
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
2048735
2048660
-
His
GTG
[Ensembl]
¡û
>W1610625691
LIAY01000145
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
885
960
+
His
GTG
[ENA]
¡û
>W1610625692
LIAY01000146
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
885
960
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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