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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278631 (21 seq.)
>WENV180042863
LQAG01008507
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
355
280
-
Gly
CCC
[ENA]
¡û
>WENV180043608
LQAI01002368
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
959
884
-
Gly
CCC
[ENA]
¡û
>WENV180043965
LQAJ01000132
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
26891
26966
+
Gly
CCC
[ENA]
¡û
>WENV183706457
PDWI01004317
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6164
6239
+
Gly
CCC
[ENA]
¡û
>WENV183746960
PPCM01000070
[PPCM] marine sediment metagenome; marine sediment
56127
56052
-
Gly
CCC
[ENA]
¡û
>WENV183747550
PPCM01004870
[PPCM] marine sediment metagenome; marine sediment
156
81
-
Gly
CCC
[ENA]
¡û
>WENV170419712
CEUM01136504
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2680
2605
-
Gly
CCC
[ENA]
¡û
>WENV170438331
CEUU01113463
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2564
2639
+
Gly
CCC
[ENA]
¡û
>WENV170441573
CEUV01222504
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
537
612
+
Gly
CCC
[ENA]
¡û
>WENV170470499
CEVF01288614
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
755
680
-
Gly
CCC
[ENA]
¡û
>WENV170903505
MDTD01203093
[MDTD] marine metagenome; seawater
8290
8365
+
Gly
CCC
[ENA]
¡û
>C181226976
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
747016
747091
+
Gly
CCC
-
¡û
>W1911737993
QTZO01000001
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
247352
247277
-
Gly
CCC
[ENA]
¡û
>W2011303440
QTZO01000001
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
247352
247277
-
Gly
CCC
[ENA]
¡û
>W2011654894
SOBK01000005
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
195362
195437
+
Gly
CCC
[ENA]
¡û
>W2012442008
WUEH01000001
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
44624
44699
+
Gly
CCC
[ENA]
¡û
>C231004616
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
49484
49409
-
Gly
CCC
-
¡û
>C241008602
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
50593
50518
-
Gly
CCC
-
¡û
>C241149572
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
2997624
2997549
-
Gly
CCC
-
¡û
>C161068257
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
3103136
3103211
+
Gly
CCC
[Ensembl]
¡û
>C131017913
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
802617
802692
+
Gly
CCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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