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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280958 (47 seq.)
>W131093637
AOMM01000081
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
3435
3360
-
Arg
GCG
[ENA]
¡û
>W131184512
ARSY01000048
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
261960
261885
-
Arg
GCG
[ENA]
¡û
>W1711283082
LZOF01000070
Spirochaetota
Brachyspira hampsonii [LZOF]
48748
48673
-
Arg
GCG
[ENA]
¡û
>W1711283089
LZOG01000022
Spirochaetota
Brachyspira hampsonii [LZOG]
2626
2699
+
Arg
GCG
[ENA]
¡û
>W1711307496
MAOX01000033
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
10190
10115
-
Arg
GCG
[ENA]
¡û
>W1711307512
MAOY01000006
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
54260
54335
+
Arg
GCG
[ENA]
¡û
>W1711351547
MDCO01000001
Spirochaetota
Brachyspira hampsonii [MDCO]
647032
647107
+
Arg
GCG
[ENA]
¡û
>W1711507065
MKXF01000044
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
2799
2874
+
Arg
GCG
[ENA]
¡û
>W131182389
ARQI01000111
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
38238
38164
-
Arg
GCG
[ENA]
¡û
>WENV180116966
OARB01000848
[OARB] human gut metagenome; ENVO:feces
1143
1218
+
Arg
GCG
[ENA]
¢þ
>WENV180117701
OARM01000010
[OARM] human gut metagenome; ENVO:feces
24379
24304
-
Arg
GCG
[ENA]
¢þ
>W141037649
ALNZ01000037
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
96508
96435
-
Arg
GCG
[ENA]
¡û
>C181038079
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
1047611
1047536
-
Arg
GCG
-
¡û
>C191017003
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
881581
881506
-
Arg
GCG
-
¡û
>W09108405
ABTG01000001
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
124995
125069
+
Arg
GCG
[ENA]
¡û
>W1910000023
AFQM01000037
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
373
448
+
Arg
GCG
[ENA]
¡û
>C09102347
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1286951
1286876
-
Arg
GCG
[Ensembl]
¡û
>W1910569122
JJMJ01000004
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
11409
11335
-
Arg
GCG
[ENA]
¡û
>W1910569210
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
2290165
2290092
-
Arg
GCG
[ENA]
¡û
>W1910574903
JQIU01000009
Spirochaetota
Brachyspira sp. G79 [JQIU]
252033
252107
+
Arg
GCG
[ENA]
¡û
>C10101950
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
2706706
2706780
+
Arg
GCG
[Ensembl]
¡û
>C10101971
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
669152
669227
+
Arg
GCG
[Ensembl]
¡û
>C11103123
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
2451394
2451319
-
Arg
GCG
[Ensembl]
¡û
>W1510641500
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
2123697
2123622
-
Arg
GCG
[ENA]
¡û
>W1511506934
JXNA01000014
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
51231
51306
+
Arg
GCG
[ENA]
¡û
>W1511506975
JXNB01000053
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
18692
18767
+
Arg
GCG
[ENA]
¡û
>W1511507021
JXNC01000119
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
16658
16733
+
Arg
GCG
[ENA]
¡û
>W1511507024
JXND01000006
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
16591
16666
+
Arg
GCG
[ENA]
¡û
>W1511507086
JXNE01000084
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
44895
44820
-
Arg
GCG
[ENA]
¡û
>W1511507101
JXNF01000038
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
49249
49174
-
Arg
GCG
[ENA]
¡û
>W1511507122
JXNG01000010
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
16756
16831
+
Arg
GCG
[ENA]
¡û
>W1511507153
JXNH01000010
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
52050
52125
+
Arg
GCG
[ENA]
¡û
>W1511507189
JXNI01000023
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
13338
13413
+
Arg
GCG
[ENA]
¡û
>W1511507229
JXNJ01000023
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
20093
20168
+
Arg
GCG
[ENA]
¡û
>W1511507274
JXNK01000093
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
44867
44792
-
Arg
GCG
[ENA]
¡û
>W1511507286
JXNL01000012
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
44920
44845
-
Arg
GCG
[ENA]
¡û
>W1511507333
JXNM01000103
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
10953
10878
-
Arg
GCG
[ENA]
¡û
>W1511507361
JXNN01000040
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
56518
56593
+
Arg
GCG
[ENA]
¡û
>W1511507390
JXNO01000037
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
56562
56637
+
Arg
GCG
[ENA]
¡û
>W1511507420
JXNP01000036
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
55436
55511
+
Arg
GCG
[ENA]
¡û
>W1511507461
JXNQ01000052
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
12047
12122
+
Arg
GCG
[ENA]
¡û
>W1511507494
JXNR01000072
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
44870
44795
-
Arg
GCG
[ENA]
¡û
>W1511507519
JXNS01000060
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
10806
10731
-
Arg
GCG
[ENA]
¡û
>C161092124
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
2437165
2437240
+
Arg
GCG
[Ensembl]
¡û
>C131001493
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
2551676
2551601
-
Arg
GCG
[Ensembl]
¡û
>C131003838
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
774732
774657
-
Arg
GCG
[Ensembl]
¡û
>C131019659
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
2116661
2116736
+
Arg
GCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK