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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281130 (74 seq.)
>W1710889331
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
258243
258168
-
Phe
GAA
[ENA]
¡û
>W1711504013
MKUD01000058
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
390536
390611
+
Phe
GAA
[ENA]
¡û
>W1711606600
MORL01000034
Bacteroidota
Arsenicibacter rosenii [MORL]
12187
12262
+
Phe
GAA
[ENA]
¡û
>W1711767865
MVBC01000001
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
618408
618481
+
Phe
GAA
[ENA]
¡û
>W1711769462
MVEC01000009
Bacteroidota
Spirosoma sp. 209 [MVEC]
488431
488504
+
Phe
GAA
[ENA]
¡û
>WENV011520
AACY020313118
Marine microbial communities from Global Ocean Sampling (GOS)
1601
1526
-
Phe
GAA
[ENA]
>C171030749
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
4730977
4730902
-
Phe
GAA
-
¡û
>C171037562
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
1478326
1478251
-
Phe
GAA
-
¡û
>C171104398
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
7879934
7880009
+
Phe
GAA
-
¡û
>C171104428
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
1056891
1056966
+
Phe
GAA
-
¡û
>W131169811
ARFA01000016
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
217732
217807
+
Phe
GAA
[ENA]
¡û
>W131169881
ARFC01000001
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
333386
333461
+
Phe
GAA
[ENA]
¡û
>W131169937
ARFD01000032
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
13258
13333
+
Phe
GAA
[ENA]
¡û
>W131181657
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
3127486
3127561
+
Phe
GAA
[ENA]
¡û
>WENV180106869
OAPF01008179
[OAPF] marine metagenome; ENVO:00002010
451
526
+
Phe
GAA
[ENA]
¢þ
>WENV180395427
OBPT01018425
[OBPT] marine metagenome; ENVO:00002010 seawater
29
104
+
Phe
GAA
[ENA]
¢þ
>WENV181222721
OFDC01000132
[OFDC] hot springs metagenome; Water
64363
64290
-
Phe
GAA
[ENA]
¢þ
>WENV181222746
OFDC01000163
[OFDC] hot springs metagenome; Water
16307
16382
+
Phe
GAA
[ENA]
¢þ
>WENV181837583
OGVL01000027
[OGVL] freshwater metagenome; freshwater
3484
3411
-
Phe
GAA
[ENA]
¢þ
>WENV181837912
OGVL01015298
[OGVL] freshwater metagenome; freshwater
583
510
-
Phe
GAA
[ENA]
¢þ
>WENV181841185
OGVR01000384
[OGVR] freshwater metagenome; freshwater
1220
1293
+
Phe
GAA
[ENA]
¢þ
>WENV181846955
OGVY01001365
[OGVY] freshwater metagenome; freshwater
485
560
+
Phe
GAA
[ENA]
¢þ
>WENV181847326
OGVY01014856
[OGVY] freshwater metagenome; freshwater
881
956
+
Phe
GAA
[ENA]
¢þ
>WENV181850123
OGWC01001312
[OGWC] freshwater metagenome; freshwater
2177
2250
+
Phe
GAA
[ENA]
¢þ
>WENV181852633
OGWH01000081
[OGWH] freshwater metagenome; freshwater
3921
3848
-
Phe
GAA
[ENA]
¢þ
>WENV181858208
OGWP01004780
[OGWP] freshwater metagenome; freshwater
160
87
-
Phe
GAA
[ENA]
¢þ
>W141242788
CAIT01000009
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
1705310
1705385
+
Phe
GAA
[ENA]
¡û
>WENV183625772
OOGG01025558
[OOGG] marine metagenome; sea ice
566
640
+
Phe
GAA
[ENA]
¢þ
>WENV183719213
PDWJ01010826
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1712
1639
-
Phe
GAA
[ENA]
¢þ
>WENV183749866
PPFU01223920
[PPFU] hypolithon metagenome; Antarctic Hypolithon
52
125
+
Phe
GAA
[ENA]
¢þ
>WENV170249670
CEQS01029008
[CEQS] marine metagenome genome assembly TARA_072_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
112662
112589
-
Phe
GAA
[ENA]
¢þ
>WENV170277304
CERP01034814
[CERP] marine metagenome genome assembly TARA_067_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
479
552
+
Phe
GAA
[ENA]
¢þ
>WENV170307727
CESJ01286246
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1562
1487
-
Phe
GAA
[ENA]
¢þ
>WENV170554563
CXWK01078837
[CXWK] wastewater metagenome; activated sludge
1096
1021
-
Phe
GAA
[ENA]
¢þ
>WENV170603949
FUWD010347309
[FUWD] metagenome; unknown
20
95
+
Phe
GAA
[ENA]
¢þ
>WENV170919180
MDTF01006817
[MDTF] marine metagenome; seawater
1634
1559
-
Phe
GAA
[ENA]
¢þ
>WENV170921734
MDTG01019275
[MDTG] marine metagenome; seawater
7380
7305
-
Phe
GAA
[ENA]
¢þ
>WENV170954974
MJUJ01003171
[MJUJ] soil metagenome; viral particles from soil sample CN
426
501
+
Phe
GAA
[ENA]
¢þ
>WENV170983662
MWVV01069325
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
128
203
+
Phe
GAA
[ENA]
¢þ
>WENV170987249
MWVX01153483
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
127
52
-
Phe
GAA
[ENA]
¢þ
>WENV170989497
MWVZ01038927
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
550
625
+
Phe
GAA
[ENA]
¢þ
>WENV170991594
MWWA01254046
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
263
338
+
Phe
GAA
[ENA]
¢þ
>C181113145
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
2421244
2421170
-
Phe
GAA
-
¡û
>C191087874
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
3234341
3234268
-
Phe
GAA
-
¡û
>W09109944
ABUR01000050
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
22848
22773
-
Phe
GAA
[ENA]
¡û
>W1910584215
JXSZ01000006
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
295238
295163
-
Phe
GAA
[ENA]
¡û
>W1911497293
OCNH01000005
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
24080
24005
-
Phe
GAA
[ENA]
¡û
>W1911726811
QTJY01000014
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
137336
137262
-
Phe
GAA
[ENA]
¡û
>W1911766795
QXED01000001
Bacteroidota
Fibrisoma montanum HYT19 [QXED]
1339102
1339175
+
Phe
GAA
[ENA]
¡û
>W1810173777
PJNI01000020
Bacteroidota
Brumimicrobium salinarum LHR20 [PJNI]
19871
19944
+
Phe
GAA
[ENA]
¡û
>W1810195648
PKRS01000006
Bacteroidota
Emticicia sp. TH156 [PKRS]
238278
238203
-
Phe
GAA
[ENA]
¡û
>W1810364357
PVTE01000002
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
357939
358014
+
Phe
GAA
[ENA]
¡û
>W1810588147
QFRJ01000004
Bacteroidota
Brumimicrobium oceani C305 [QFRJ]
228018
228091
+
Phe
GAA
[ENA]
¡û
>W1810588149
QFRJ01000004
Bacteroidota
Brumimicrobium oceani C305 [QFRJ]
254347
254420
+
Phe
GAA
[ENA]
¡û
>W1810625914
QHKM01000006
Bacteroidota
Hymenobacter edaphi NL [QHKM]
67070
66997
-
Phe
GAA
[ENA]
¡û
>W1810692073
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
5359719
5359794
+
Phe
GAA
[ENA]
¡û
>W1810694557
QLMC01000003
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
640221
640294
+
Phe
GAA
[ENA]
¡û
>W1810888700
QURB01000013
Bacteroidota
Brumimicrobium aurantiacum N62 [QURB]
7723
7796
+
Phe
GAA
[ENA]
¡û
>W1810913025
QVMT01000002
Bacteroidota
Emticicia sp. C21 [QVMT]
547138
547211
+
Phe
GAA
[ENA]
¡û
>SRA1015624
SRR023846.136954
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
82
157
+
Phe
GAA
[SRA]
>SRA1016055
SRR023846.326670
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
140
-
Phe
GAA
[SRA]
>C151068615
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
6592281
6592356
+
Phe
GAA
[Ensembl]
¡û
>SRA1028083
SRR035086.255366
454 Sequencing (SRP001807)
438
363
-
Phe
GAA
[SRA]
>C10111780
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
6753512
6753437
-
Phe
GAA
[Ensembl]
¡û
>C11112282
CP002305
Bacteroidota
Leadbetterella byssophila DSM 17132 [CP002305]
2843865
2843940
+
Phe
GAA
[Ensembl]
¡û
>C121003584
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
2114782
2114709
-
Phe
GAA
[Ensembl]
¡û
>C161104953
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
306627
306702
+
Phe
GAA
[Ensembl]
¡û
>W1610617462
LGTQ01000006
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
295238
295163
-
Phe
GAA
[ENA]
¡û
>W1610749709
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
258243
258168
-
Phe
GAA
[ENA]
¡û
>W1710558219
FOLQ01000042
Bacteroidota
Spirosoma endophyticum [FOLQ]
19841
19766
-
Phe
GAA
[ENA]
¡û
>W1710561175
FONY01000020
Bacteroidota
Thermoflexibacter ruber [FONY]
42152
42077
-
Phe
GAA
[ENA]
¡û
>W1710577290
FPAS01000002
Bacteroidota
Lishizhenia tianjinensis [FPAS]
442260
442187
-
Phe
GAA
[ENA]
¡û
>W1710577291
FPAS01000002
Bacteroidota
Lishizhenia tianjinensis [FPAS]
442060
441985
-
Phe
GAA
[ENA]
¡û
>W1710743049
LGTQ01000006
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
295238
295163
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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