This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281435 (75 seq.)
>W1710878916
LMRI01000003
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
1110526
1110450
-
Pro
GGG
[ENA]
¡û
>W1710879236
LMRN01000012
Actinomycetota
Rhodococcus sp. Leaf225 [LMRN]
17812
17886
+
Pro
GGG
[ENA]
¡û
>W1710879344
LMRP01000003
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
570956
570880
-
Pro
GGG
[ENA]
¡û
>W1710879377
LMRQ01000013
Actinomycetota
Rhodococcus sp. Leaf258 [LMRQ]
20813
20887
+
Pro
GGG
[ENA]
¡û
>W1711050415
LRRM01000066
Actinomycetota
Nocardia brasiliensis [LRRM]
993704
993628
-
Pro
GGG
[ENA]
¡û
>W1711069510
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
981373
981297
-
Pro
GGG
[ENA]
¡û
>W1711080657
LSRF01000001
Actinomycetota
Tsukamurella pseudospumae [LSRF]
982165
982089
-
Pro
GGG
[ENA]
¡û
>W1711080714
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
1210847
1210771
-
Pro
GGG
[ENA]
¡û
>W1711080789
LSRH01000031
Actinomycetota
Tsukamurella pulmonis [LSRH]
168170
168096
-
Pro
GGG
[ENA]
¡û
>W1711080835
LSRI01000023
Actinomycetota
Tsukamurella pulmonis [LSRI]
83021
82945
-
Pro
GGG
[ENA]
¡û
>C171072536
CP018082
Actinomycetota
Nocardia mangyaensis Y48 [CP018082]
2820818
2820892
+
Pro
GGG
-
¡û
>W131087848
AODO01000010
Actinomycetota
Rhodococcus triatomae BKS 15-14 [AODO]
18027
18101
+
Pro
GGG
[ENA]
¡û
>W131111992
APMY01000004
Actinomycetota
Rhodococcus rhodnii LMG 5362 [APMY]
137009
136933
-
Pro
GGG
[ENA]
¡û
>WENV180032132
FTJU01243433
[FTJU] metagenome; soil
5233
5308
+
Pro
GGG
[ENA]
¢þ
>W141231449
BAUA01000197
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
62532
62456
-
Pro
GGG
[ENA]
¡û
>W141243912
CAJY01000028
Actinomycetota
Tsukamurella sp. 1534 [CAJY]
29526
29452
-
Pro
GGG
[ENA]
¡û
>W141278592
JAFQ01000004
Actinomycetota
Nocardia sp. BMG51109 [JAFQ]
5644829
5644753
-
Pro
GGG
[ENA]
¡û
>C181035844
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
2617408
2617332
-
Pro
GGG
-
¡û
>C181057462
CP022088
Actinomycetota
Nocardia brasiliensis FDAARGOS_352 [CP022088]
3039835
3039909
+
Pro
GGG
-
¡û
>C191065478
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
8260560
8260484
-
Pro
GGG
-
¡û
>C191208383
LR134352
Actinomycetota
Nocardia asteroides NCTC11293 [LR134352]
3705184
3705110
-
Pro
GGG
-
¡û
>W141702678
JMLQ01000003
Actinomycetota
Rhodococcus sp. UNC23MFCrub1.1 [JMLQ]
608681
608607
-
Pro
GGG
[ENA]
¡û
>W141769093
JOFP01000006
Actinomycetota
Pilimelia anulata [JOFP]
242
316
+
Pro
GGG
[ENA]
¡û
>W1911532676
OIFR01000012
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
14073
13997
-
Pro
GGG
[ENA]
¡û
>W1911717719
QQQF01000111
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
25807
25883
+
Pro
GGG
[ENA]
¡û
>W1810173143
PJMW01000001
Actinomycetota
Nocardia fluminea DSM 44489 [PJMW]
799229
799305
+
Pro
GGG
[ENA]
¡û
>W1810532543
QCYJ01000175
Actinomycetota
Nocardia aurea SYSU K10002 [QCYJ]
169024
169098
+
Pro
GGG
[ENA]
¡û
>W1810608628
QGTL01000015
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
182912
182986
+
Pro
GGG
[ENA]
¡û
>W1810659657
QJKF01000015
Actinomycetota
Nocardia tenerifensis DSM 44704 [QJKF]
34264
34190
-
Pro
GGG
[ENA]
¡û
>W1510649788
CVQP01000005
Actinomycetota
Rhodococcus sp. RD6.2 [CVQP]
793260
793186
-
Pro
GGG
[ENA]
¡û
>W1511221565
JNFP01000015
Actinomycetota
Nocardia vulneris W9851 [JNFP]
55057
55131
+
Pro
GGG
[ENA]
¡û
>W1511509017
JXQS01000011
Actinomycetota
Rhodococcus sp. MEB064 [JXQS]
42380
42304
-
Pro
GGG
[ENA]
¡û
>W11148997
AEUD01000018
Actinomycetota
Gordonia neofelifaecis NRRL B-59395 [AEUD]
54837
54761
-
Pro
GGG
[ENA]
¡û
>W121055500
AIHV01000001
Actinomycetota
Nocardia brasiliensis ATCC 700358 [AIHV]
1004846
1004770
-
Pro
GGG
[ENA]
¡û
>W121123634
BAED01000014
Actinomycetota
Gordonia amarae NBRC 15530 [BAED]
18191
18265
+
Pro
GGG
[ENA]
¡û
>W121124852
BAFO01000030
Actinomycetota
Nocardia asteroides NBRC 15531 [BAFO]
53258
53184
-
Pro
GGG
[ENA]
¡û
>W121125100
BAFT01000125
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
90338
90264
-
Pro
GGG
[ENA]
¡û
>W121125313
BAFX01000204
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
16768
16844
+
Pro
GGG
[ENA]
¡û
>W121125507
BAGB01000170
Actinomycetota
Nocardia jiangxiensis NBRC 101359 [BAGB]
7373
7297
-
Pro
GGG
[ENA]
¡û
>W121125833
BAGH01000607
Actinomycetota
Nocardia tenerifensis NBRC 101015 [BAGH]
33398
33324
-
Pro
GGG
[ENA]
¡û
>W121125994
BAGK01000302
Actinomycetota
Nocardia thailandica NBRC 100428 [BAGK]
14145
14071
-
Pro
GGG
[ENA]
¡û
>W121126038
BAGL01000120
Actinomycetota
Nocardia transvalensis NBRC 15921 [BAGL]
27452
27376
-
Pro
GGG
[ENA]
¡û
>W121126146
BAGN01000408
Actinomycetota
Nocardia vinacea NBRC 16497 [BAGN]
4394
4468
+
Pro
GGG
[ENA]
¡û
>W1610068683
BCRN01000006
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
337988
337914
-
Pro
GGG
[ENA]
¡û
>W1610078537
BDAY01000102
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
1194
1120
-
Pro
GGG
[ENA]
¡û
>W1610078598
BDAZ01000093
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
23932
24008
+
Pro
GGG
[ENA]
¡û
>W1610079010
BDBI01000011
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
309009
309083
+
Pro
GGG
[ENA]
¡û
>W1610079439
BDBQ01000053
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
6472
6396
-
Pro
GGG
[ENA]
¡û
>W1610079883
BDBY01000396
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
7557
7631
+
Pro
GGG
[ENA]
¡û
>W1610080081
BDCC01000060
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
80705
80781
+
Pro
GGG
[ENA]
¡û
>W1610080405
BDCI01000017
Actinomycetota
Nocardia vulneris [BDCI]
55057
55131
+
Pro
GGG
[ENA]
¡û
>C131008864
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
3572035
3571959
-
Pro
GGG
[Ensembl]
¡û
>W1610741262
LMRI01000003
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
1110526
1110450
-
Pro
GGG
[ENA]
¡û
>W1610741582
LMRN01000012
Actinomycetota
Rhodococcus sp. Leaf225 [LMRN]
17812
17886
+
Pro
GGG
[ENA]
¡û
>W1610741690
LMRP01000003
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
570956
570880
-
Pro
GGG
[ENA]
¡û
>W1610741723
LMRQ01000013
Actinomycetota
Rhodococcus sp. Leaf258 [LMRQ]
20813
20887
+
Pro
GGG
[ENA]
¡û
>W1610891544
LRRM01000066
Actinomycetota
Nocardia brasiliensis [LRRM]
993704
993628
-
Pro
GGG
[ENA]
¡û
>W1610910038
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
981373
981297
-
Pro
GGG
[ENA]
¡û
>W1610919524
LSRF01000001
Actinomycetota
Tsukamurella pseudospumae [LSRF]
982165
982089
-
Pro
GGG
[ENA]
¡û
>W1610919581
LSRG01000012
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
1210847
1210771
-
Pro
GGG
[ENA]
¡û
>W1610919656
LSRH01000031
Actinomycetota
Tsukamurella pulmonis [LSRH]
168170
168096
-
Pro
GGG
[ENA]
¡û
>W1610919702
LSRI01000023
Actinomycetota
Tsukamurella pulmonis [LSRI]
83021
82945
-
Pro
GGG
[ENA]
¡û
>W1710066056
BCRN01000006
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
337988
337914
-
Pro
GGG
[ENA]
¡û
>W1710072123
BCXD01000003
Actinomycetota
Rhodococcus rhodnii NBRC 100604 [BCXD]
18336
18412
+
Pro
GGG
[ENA]
¡û
>W1710072303
BCXG01000010
Actinomycetota
Rhodococcus tukisamuensis NBRC 100609 [BCXG]
19813
19887
+
Pro
GGG
[ENA]
¡û
>W1710077096
BDAY01000102
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
1194
1120
-
Pro
GGG
[ENA]
¡û
>W1710077157
BDAZ01000093
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
23932
24008
+
Pro
GGG
[ENA]
¡û
>W1710077569
BDBI01000011
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
309009
309083
+
Pro
GGG
[ENA]
¡û
>W1710077998
BDBQ01000053
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
6472
6396
-
Pro
GGG
[ENA]
¡û
>W1710078442
BDBY01000396
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
7557
7631
+
Pro
GGG
[ENA]
¡û
>W1710078640
BDCC01000060
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
80705
80781
+
Pro
GGG
[ENA]
¡û
>W1710078964
BDCI01000017
Actinomycetota
Nocardia vulneris [BDCI]
55057
55131
+
Pro
GGG
[ENA]
¡û
>W1710513338
FNAB01000004
Actinomycetota
Rhodococcus tukisamuensis [FNAB]
422264
422190
-
Pro
GGG
[ENA]
¡û
>W1710527728
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
2688837
2688763
-
Pro
GGG
[ENA]
¡û
>W1710568880
FOTX01000005
Actinomycetota
Nocardia asteroides [FOTX]
428165
428091
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK