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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282381 (90 seq.)
>W1710796474
LJSC01000044
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
4543
4618
+
Trp
CCA
[ENA]
¡û
>W1710860188
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
62105
62030
-
Trp
CCA
[ENA]
¡û
>W1710861942
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
515724
515799
+
Trp
CCA
[ENA]
¡û
>W1710864862
LMGF01000003
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1703213
1703288
+
Trp
CCA
[ENA]
¡û
>W1710865015
LMGI01000002
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
475769
475694
-
Trp
CCA
[ENA]
¡û
>W1710867425
LMIG01000004
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
475735
475660
-
Trp
CCA
[ENA]
¡û
>W1710912497
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
135563
135638
+
Trp
CCA
[ENA]
¡û
>W1710912545
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
606999
606924
-
Trp
CCA
[ENA]
¡û
>W1710912591
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
615171
615096
-
Trp
CCA
[ENA]
¡û
>W1710912634
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
135647
135722
+
Trp
CCA
[ENA]
¡û
>W1710912832
LNRY01000006
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
35366
35441
+
Trp
CCA
[ENA]
¡û
>W131176511
ARKC01000010
Alphaproteobacteria
Hirschia maritima DSM 19733 [ARKC]
598529
598604
+
Trp
CCA
[ENA]
¡û
>W1711259775
LYVN01000025
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
29051
29126
+
Trp
CCA
[ENA]
¡û
>W1711504865
MKUZ01000001
Alphaproteobacteria
Devosia sp. 66-22 [MKUZ]
11047
11122
+
Trp
CCA
[ENA]
¡û
>W1711504923
MKVA01000005
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
975735
975660
-
Trp
CCA
[ENA]
¡û
>W1711506121
MKWD01000007
Alphaproteobacteria
Rhodobacterales bacterium 65-51 [MKWD]
3487
3562
+
Trp
CCA
[ENA]
¡û
>W1712105812
NISK01000001
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
238229
238154
-
Trp
CCA
[ENA]
¡û
>C171094543
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
132842
132917
+
Trp
CCA
-
¡û
>WENV180028921
FTJH01449499
[FTJH] metagenome; soil
441
516
+
Trp
CCA
[ENA]
¡û
>WENV180284202
OBID01020810
[OBID] metagenome; sludge
888
963
+
Trp
CCA
[ENA]
¡û
>WENV180827461
ODKA01000319
[ODKA] human metagenome; G_DNA_Stool
2168
2243
+
Trp
CCA
[ENA]
¡û
>WENV180876080
ODLT01002850
[ODLT] human metagenome; G_DNA_Stool
1669
1744
+
Trp
CCA
[ENA]
¡û
>WENV180992952
ODVQ01000252
[ODVQ] human metagenome; G_DNA_Stool
2189
2264
+
Trp
CCA
[ENA]
¡û
>WENV180994240
ODVQ01048447
[ODVQ] human metagenome; G_DNA_Stool
183
258
+
Trp
CCA
[ENA]
¡û
>WENV181308226
OFIS01001062
[OFIS] sludge metagenome; sludge
8174
8099
-
Trp
CCA
[ENA]
¡û
>WENV181311460
OFJB01002460
[OFJB] sludge metagenome; sludge
211
286
+
Trp
CCA
[ENA]
¡û
>WENV181401664
OFTX01002327
[OFTX] sludge metagenome; sludge
5329
5254
-
Trp
CCA
[ENA]
¡û
>WENV181460633
OGEL01030654
[OGEL] metagenome; Human gut stool
116
191
+
Trp
CCA
[ENA]
¡û
>WENV181517807
OGGZ01041107
[OGGZ] metagenome; Human gut stool
215
140
-
Trp
CCA
[ENA]
¡û
>WENV181519467
OGHC01000209
[OGHC] metagenome; Human gut stool
35179
35254
+
Trp
CCA
[ENA]
¡û
>WENV181523549
OGHH01000212
[OGHH] metagenome; Human gut stool
2182
2257
+
Trp
CCA
[ENA]
¡û
>WENV181533869
OGHS01000289
[OGHS] metagenome; Human gut stool
12658
12583
-
Trp
CCA
[ENA]
¡û
>WENV181546491
OGII01000177
[OGII] metagenome; Human gut stool
61173
61098
-
Trp
CCA
[ENA]
¡û
>WENV181605485
OGLJ01011624
[OGLJ] metagenome; Human gut stool
2043
2118
+
Trp
CCA
[ENA]
¡û
>WENV181621257
OGMF01003237
[OGMF] metagenome; Human gut stool
10547
10622
+
Trp
CCA
[ENA]
¡û
>WENV181994272
OHAS01021038
[OHAS] human gut metagenome; faeces
972
1047
+
Trp
CCA
[ENA]
¡û
>WENV182012984
OHBN01002185
[OHBN] human gut metagenome; feces
3227
3302
+
Trp
CCA
[ENA]
¡û
>WENV182022332
OHCD01000091
[OHCD] human gut metagenome; feces
53218
53293
+
Trp
CCA
[ENA]
¡û
>WENV182055492
OHEL01020081
[OHEL] human gut metagenome; feces
915
840
-
Trp
CCA
[ENA]
¡û
>WENV182057584
OHEO01041795
[OHEO] human gut metagenome; feces
378
303
-
Trp
CCA
[ENA]
¡û
>WENV182058232
OHEP01004852
[OHEP] human gut metagenome; feces
4486
4411
-
Trp
CCA
[ENA]
¡û
>WENV182059161
OHEQ01001526
[OHEQ] human gut metagenome; feces
7492
7567
+
Trp
CCA
[ENA]
¡û
>WENV183729046
PJTQ01003194
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1734
1809
+
Trp
CCA
[ENA]
¡û
>WENV183740353
PJUF01001321
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3959
4034
+
Trp
CCA
[ENA]
¡û
>WENV170130822
CENR01030255
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
656
731
+
Trp
CCA
[ENA]
¡û
>WENV170276853
CERO01037620
[CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
239779
239704
-
Trp
CCA
[ENA]
¡û
>WENV170556462
CXWL01009061
[CXWL] groundwater metagenome; biofilm material
8689
8614
-
Trp
CCA
[ENA]
¡û
>WENV170708368
LNAP01074571
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
264
339
+
Trp
CCA
[ENA]
¡û
>WENV170962720
MRWF01024650
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
893
968
+
Trp
CCA
[ENA]
¡û
>WENV170963445
MRWG01000190
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
103688
103613
-
Trp
CCA
[ENA]
¡û
>WENV170974749
MTKY01073177
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
375
300
-
Trp
CCA
[ENA]
¡û
>W141485024
JFZB01000003
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
23844
23769
-
Trp
CCA
[ENA]
¡û
>W1910744363
MIAL01000029
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
8963
9038
+
Trp
CCA
[ENA]
¡û
>W1910744372
MIAM01000002
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
44531
44456
-
Trp
CCA
[ENA]
¡û
>W1911787283
QXXQ01000002
Alphaproteobacteria
Gemmobacter sp. YJ-T1-11 [QXXQ]
46890
46965
+
Trp
CCA
[ENA]
¡û
>W1810504080
QBKP01000004
Alphaproteobacteria
Gemmobacter caeni DSM 21823 [QBKP]
49896
49971
+
Trp
CCA
[ENA]
¡û
>C151044395
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
3126642
3126567
-
Trp
CCA
[Ensembl]
¡û
>W2010439037
JAAATW010000009
Alphaproteobacteria
Rhodobacter sp. CCP-1 [JAAATW]
20306
20231
-
Trp
CCA
[ENA]
¡û
>W2010559905
JAASQN010000002
Alphaproteobacteria
Sphingopyxis panaciterrae DSM 27164 [JAASQN]
956824
956749
-
Trp
CCA
[ENA]
¡û
>W2010566966
JAATIT010000001
Alphaproteobacteria
Sphingopyxis italica DSM 25229 [JAATIT]
131662
131587
-
Trp
CCA
[ENA]
¡û
>W2010596929
JABFCX010000002
Alphaproteobacteria
Parvularcula sp. ZS-1/3 [JABFCX]
677486
677411
-
Trp
CCA
[ENA]
¡û
>W2010722894
JACICF010000001
Alphaproteobacteria
Sphingomicrobium lutaoense DSM 24194 [JACICF]
1271936
1272011
+
Trp
CCA
[ENA]
¡û
>W2010877795
MIAL01000029
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
8963
9038
+
Trp
CCA
[ENA]
¡û
>W2010877804
MIAM01000002
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
44531
44456
-
Trp
CCA
[ENA]
¡û
>W2011338634
QXXQ01000002
Alphaproteobacteria
Gemmobacter sp. YJ-T1-11 [QXXQ]
46890
46965
+
Trp
CCA
[ENA]
¡û
>W2011539392
SCNS01000004
Alphaproteobacteria
Sphingomonadaceae bacterium 3R27C6 [SCNS]
172870
172795
-
Trp
CCA
[ENA]
¡û
>W2011540821
SCOT01000013
Alphaproteobacteria
Sphingopyxis sp. L1A2A [SCOT]
22386
22461
+
Trp
CCA
[ENA]
¡û
>W2011604982
SJFN01000054
Alphaproteobacteria
Ancalomicrobiaceae bacterium SA-279 [SJFN]
621
696
+
Trp
CCA
[ENA]
¡û
>W2011978611
VCQM01000333
Alphaproteobacteria
Thioclava sp. BHET1 [VCQM]
2423
2348
-
Trp
CCA
[ENA]
¡û
>W2012082648
VLLH01000038
Alphaproteobacteria
Gemmobacter caeni CGMCC 1.7745 [VLLH]
18894
18819
-
Trp
CCA
[ENA]
¡û
>W2110031234
BMMC01000017
Alphaproteobacteria
Sphingopyxis bauzanensis CGMCC 1.8959 [BMMC]
64167
64242
+
Trp
CCA
[ENA]
¡û
>W2110049071
BMYI01000032
Alphaproteobacteria
Gemmobacter nanjingensis KCTC 23298 [BMYI]
18909
18834
-
Trp
CCA
[ENA]
¡û
>W2110517940
JAFNIH010000023
Alphaproteobacteria
Pinisolibacter sp. B13 [JAFNIH]
190900
190825
-
Trp
CCA
[ENA]
¡û
>C201257408
CP053015
Alphaproteobacteria
Sphingomonas sp. CSW-10 [CP053015]
758499
758574
+
Trp
CCA
-
¡û
>C211137986
CP060725
Alphaproteobacteria
Sphingopyxis sp. OPL5 [CP060725]
3618014
3618089
+
Trp
CCA
-
¡û
>C211259196
CP069370
Alphaproteobacteria
Rhodobacter sp. N10 [CP069370]
123320
123245
-
Trp
CCA
-
¡û
>W1511221226
JNFD01000047
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
13663
13738
+
Trp
CCA
[ENA]
¡û
>W1610660431
LJSC01000044
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
4543
4618
+
Trp
CCA
[ENA]
¡û
>W1610727208
LMGF01000003
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1703213
1703288
+
Trp
CCA
[ENA]
¡û
>W1610727361
LMGI01000002
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
475769
475694
-
Trp
CCA
[ENA]
¡û
>W1610729771
LMIG01000004
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
475735
475660
-
Trp
CCA
[ENA]
¡û
>W1610770856
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
135563
135638
+
Trp
CCA
[ENA]
¡û
>W1610770904
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
606999
606924
-
Trp
CCA
[ENA]
¡û
>W1610770950
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
615171
615096
-
Trp
CCA
[ENA]
¡û
>W1610770993
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
135647
135722
+
Trp
CCA
[ENA]
¡û
>W1610771070
LNRV01000015
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
11720
11645
-
Trp
CCA
[ENA]
¡û
>W1610771083
LNRW01000001
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
129055
129130
+
Trp
CCA
[ENA]
¡û
>W1610771128
LNRX01000001
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
135560
135635
+
Trp
CCA
[ENA]
¡û
>W1610771191
LNRY01000006
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
35366
35441
+
Trp
CCA
[ENA]
¡û
>WENV080039
AATO01001784
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1466
1389
-
Trp
CCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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