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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282700 (58 seq.)
>W1711091823
LTDM01000014
Bacillota
Tissierella creatinophila DSM 6911 [LTDM]
40476
40401
-
Thr
TGT
[ENA]
¡û
>W1711091846
LTDM01000035
Bacillota
Tissierella creatinophila DSM 6911 [LTDM]
6822
6747
-
Thr
TGT
[ENA]
¡û
>W131245128
CARA01000114
Bacillota
Schnuerera ultunensis Esp [CARA]
5968
5893
-
Thr
TGT
[ENA]
¡û
>W141214399
AZSU01000003
Bacillota
Schnuerera ultunensis DSM 10521 [AZSU]
842755
842680
-
Thr
TGT
[ENA]
¡û
>W141214403
AZSU01000003
Bacillota
Schnuerera ultunensis DSM 10521 [AZSU]
841593
841518
-
Thr
TGT
[ENA]
¡û
>W141214419
AZSU01000004
Bacillota
Schnuerera ultunensis DSM 10521 [AZSU]
5840
5915
+
Thr
TGT
[ENA]
¡û
>W141265092
CCEZ01000043
Bacillota
Anaerosalibacter massiliensis ND1 [CCEZ]
527080
527005
-
Thr
TGT
[ENA]
¡û
>W141265111
CCEZ01000076
Bacillota
Anaerosalibacter massiliensis ND1 [CCEZ]
11117
11042
-
Thr
TGT
[ENA]
¡û
>WENV170001681
AGFS01122838
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
405
330
-
Thr
TGT
[ENA]
¡û
>WENV170001745
AGFS01140069
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
180
105
-
Thr
TGT
[ENA]
¡û
>WENV170563827
CZCB01031002
[CZCB] anaerobic digester metagenome; anaerobic digester
143
68
-
Thr
TGT
[ENA]
¡û
>WENV170644000
JMBV01020003
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
191
266
+
Thr
TGT
[ENA]
¡û
>WENV170644344
JMBW01007032
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
615
690
+
Thr
TGT
[ENA]
¡û
>WENV170644433
JMBW01015014
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
688
763
+
Thr
TGT
[ENA]
¡û
>WENV170644616
JMBW01041466
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
331
406
+
Thr
TGT
[ENA]
¡û
>WENV170644745
JMBW01080247
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
2
77
+
Thr
TGT
[ENA]
¡û
>WENV170644750
JMBW01081482
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
51
126
+
Thr
TGT
[ENA]
¡û
>WENV170645182
JMBX01013438
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
330
405
+
Thr
TGT
[ENA]
¡û
>WENV170645243
JMBX01024798
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
16
91
+
Thr
TGT
[ENA]
¡û
>WENV170968417
MTKW01009056
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1794
1869
+
Thr
TGT
[ENA]
¡û
>C191135192
CP035130
Bacillota
Gudongella oleilytica W6 [CP035130]
1104535
1104610
+
Thr
TGT
-
¡û
>W1910373592
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
629
704
+
Thr
TGT
[ENA]
¡û
>W1910373618
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
943
1018
+
Thr
TGT
[ENA]
¡û
>W2010271433
CABKTM020000043
Bacillota
Anaerosalibacter massiliensis [CABKTM]
527080
527005
-
Thr
TGT
[ENA]
¡û
>W2010271452
CABKTM020000076
Bacillota
Anaerosalibacter massiliensis [CABKTM]
11117
11042
-
Thr
TGT
[ENA]
¡û
>W2010273470
CABKUS020000014
Bacillota
Clostridiales bacterium [CABKUS]
762265
762190
-
Thr
TGT
[ENA]
¡û
>W2010401465
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
629
704
+
Thr
TGT
[ENA]
¡û
>W2010401491
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
943
1018
+
Thr
TGT
[ENA]
¡û
>W2011556878
SETF01000050
Bacillota
Sporanaerobacter acetigenes F-12 [SETF]
176
101
-
Thr
TGT
[ENA]
¡û
>W2011627084
SMAE01000002
Bacillota
Keratinibaculum paraultunense DSM 26752 [SMAE]
1175
1250
+
Thr
TGT
[ENA]
¡û
>W2011629663
SMBS01000023
Bacillota
Tissierella praeacuta DSM 5675 [SMBS]
6004
5929
-
Thr
TGT
[ENA]
¡û
>W2011631929
SMDD01000003
Bacillota
Laceyella sacchari DSM 43356 [SMDD]
643225
643150
-
Thr
TGT
[ENA]
¡û
>W2011835358
UGSZ01000001
Bacillota
Peptoniphilus lacrimalis NCTC13149 [UGSZ]
472560
472635
+
Thr
TGT
[ENA]
¡û
>W2011835383
UGSZ01000001
Bacillota
Peptoniphilus lacrimalis NCTC13149 [UGSZ]
1013111
1013036
-
Thr
TGT
[ENA]
¡û
>W2011836011
UGTH01000001
Bacillota
Peptoniphilus indolicus NCTC11088 [UGTH]
868792
868717
-
Thr
TGT
[ENA]
¡û
>W2011836031
UGTH01000001
Bacillota
Peptoniphilus indolicus NCTC11088 [UGTH]
131874
131799
-
Thr
TGT
[ENA]
¡û
>W2012153499
VULR01000017
Bacillota
Anaerosalibacter bizertensis Med78-601-WT-4W-RMD-3 [VULR]
1014
1089
+
Thr
TGT
[ENA]
¡û
>W2012153517
VULR01000026
Bacillota
Anaerosalibacter bizertensis Med78-601-WT-4W-RMD-3 [VULR]
916
991
+
Thr
TGT
[ENA]
¡û
>W2110248307
JACRTG010000021
Bacillota
Tissierellaceae bacterium BX21 [JACRTG]
32701
32629
-
Thr
TGT
[ENA]
¡û
>W2110248327
JACRTG010000025
Bacillota
Tissierellaceae bacterium BX21 [JACRTG]
115909
115834
-
Thr
TGT
[ENA]
¡û
>W2110405507
JAECVY010000001
Bacillota
Thermoactinomyces sp. CICC 10522 [JAECVY]
1455
1530
+
Thr
TGT
[ENA]
¡û
>W2110618891
JAHLNM010000037
Bacillota
Tissierella praeacuta N14 [JAHLNM]
878
953
+
Thr
TGT
[ENA]
¡û
>W2110619523
JAHLOA010000004
Bacillota
Anaerosalibacter bizertensis N103 [JAHLOA]
282490
282415
-
Thr
TGT
[ENA]
¡û
>W2110619551
JAHLOA010000023
Bacillota
Anaerosalibacter bizertensis N103 [JAHLOA]
29891
29816
-
Thr
TGT
[ENA]
¡û
>W2110621766
JAHLPS010000073
Bacillota
Caproiciproducens sp. MSJ-32 [JAHLPS]
122
197
+
Thr
TGT
[ENA]
¡û
>C211249632
CP068564
Bacillota
Keratinibaculum paraultunense KD-1 [CP068564]
732693
732768
+
Thr
TGT
-
¡û
>C211249661
CP068564
Bacillota
Keratinibaculum paraultunense KD-1 [CP068564]
1208908
1208833
-
Thr
TGT
-
¡û
>C231631599
CP120677
Bacillota
Tissierella sp. Yu-01 [CP120677]
477896
477971
+
Thr
TGT
-
¡û
>C231631628
CP120677
Bacillota
Tissierella sp. Yu-01 [CP120677]
1571141
1571066
-
Thr
TGT
-
¡û
>W1510725115
CXYU01000021
Bacillota
Clostridiales bacterium mt11 [CXYU]
39541
39466
-
Thr
TGT
[ENA]
¡û
>W1511313152
JPST01000066
Bacillota
Thermoactinomyces daqus H-18 [JPST]
1385
1460
+
Thr
TGT
[ENA]
¡û
>W1610095125
CYUJ01000002
Bacillota
Neofamilia massiliensis SIT13 [CYUJ]
990
1065
+
Thr
TGT
[ENA]
¡û
>W1610095135
CYUJ01000002
Bacillota
Neofamilia massiliensis SIT13 [CYUJ]
312890
312965
+
Thr
TGT
[ENA]
¡û
>W1710097920
CYUJ01000002
Bacillota
Neofamilia massiliensis SIT13 [CYUJ]
990
1065
+
Thr
TGT
[ENA]
¡û
>W1710097930
CYUJ01000002
Bacillota
Neofamilia massiliensis SIT13 [CYUJ]
312890
312965
+
Thr
TGT
[ENA]
¡û
>W1710565978
FORR01000003
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
5902
5977
+
Thr
TGT
[ENA]
¡û
>W1710587056
FQXR01000021
Bacillota
Sporanaerobacter acetigenes DSM 13106 [FQXR]
29
104
+
Thr
TGT
[ENA]
¡û
>W1710605171
FWWR01000009
Bacillota
Peptoniphilus asaccharolyticus DSM 20463 [FWWR]
934562
934487
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK