This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282760 (26 seq.)
>C025733
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
242215
242287
+
Trp
CCA
[Ensembl]
¡û
>WENV183714438
PDWI01183972
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1357
1283
-
Trp
CCA
[ENA]
¢þ
>C191179232
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
243412
243486
+
Trp
CCA
-
¡û
>C151004481
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
243417
243491
+
Trp
CCA
[Ensembl]
¡û
>C10113582
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
243436
243510
+
Trp
CCA
[Ensembl]
¡û
>C10113626
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
243397
243471
+
Trp
CCA
[Ensembl]
¡û
>C11122892
CP002103
Spirochaetota
Treponema paraluiscuniculi Cuniculi A [CP002103]
240793
240867
+
Trp
CCA
[Ensembl]
¡û
>C121002400
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
242982
243056
+
Trp
CCA
[Ensembl]
¡û
>C121002445
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
243328
243402
+
Trp
CCA
[Ensembl]
¡û
>C121002490
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
243298
243372
+
Trp
CCA
[Ensembl]
¡û
>C121006095
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
243424
243498
+
Trp
CCA
[Ensembl]
¡û
>C161017253
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
243337
243411
+
Trp
CCA
[Ensembl]
¡û
>C161028018
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
243339
243413
+
Trp
CCA
-
¡û
>C161028062
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
243339
243413
+
Trp
CCA
-
¡û
>C161028106
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
242233
242307
+
Trp
CCA
-
¡û
>C161028150
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
243277
243351
+
Trp
CCA
-
¡û
>C161028194
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
243416
243490
+
Trp
CCA
-
¡û
>C161028238
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
243431
243505
+
Trp
CCA
-
¡û
>C161028283
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
243412
243486
+
Trp
CCA
-
¡û
>C161028327
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
243412
243486
+
Trp
CCA
-
¡û
>C161028371
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
243408
243482
+
Trp
CCA
-
¡û
>C161084177
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
107029
107103
+
Trp
CCA
-
¡û
>C131001857
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
243423
243497
+
Trp
CCA
[Ensembl]
¡û
>C131009488
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
243335
243409
+
Trp
CCA
[Ensembl]
¡û
>C131011349
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
243370
243444
+
Trp
CCA
-
¡û
>C131011393
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
243412
243486
+
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK