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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283236 (58 seq.)
>A171001060
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1111967
1111893
-
Asp
GTC
-
¡û
>A171002357
CP002817
Thermoproteota
Sulfolobus acidocaldarius N8 [CP002817]
430673
430747
+
Asp
GTC
-
¡û
>A171002382
CP002818
Thermoproteota
Sulfolobus acidocaldarius Ron12/I [CP002818]
430673
430747
+
Asp
GTC
-
¡û
>A171004068
CP006977
Thermoproteota
Sulfolobus acidocaldarius SUSAZ [CP006977]
410577
410651
+
Asp
GTC
-
¡û
>A171006778
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
813203
813130
-
Asp
GTC
-
¡û
>WENV181406339
OGCG01000132
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
213
139
-
Asp
GTC
[ENA]
¢þ
>WENV181406502
OGCG01000351
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
9231
9158
-
Asp
GTC
[ENA]
¢þ
>At0422
CP000077
Thermoproteota
Sulfolobus acidocaldarius DSM 639 [CP000077]
430670
430742
+
Asp
GTC
[Ensembl]
¡û
>At0493
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
184684
184612
-
Asp
GTC
[Ensembl]
¡û
>W1910128771
BHWZ01000001
Thermoproteota
Sulfolobus acidocaldarius DP-5 [BHWZ]
430676
430750
+
Asp
GTC
[ENA]
¡û
>W1911654439
QEFI01000001
Thermoproteota
Sulfolobus sp. SCGC AB-777_L09 [QEFI]
41019
41092
+
Asp
GTC
[ENA]
¡û
>ENV09004242
ADKL01000413
Hot springs metagenome ctg_1106426165452
1549
1475
-
Asp
GTC
[ENA]
¡û
>W1610004577
AHJL01000005
Thermoproteota
Sulfolobus islandicus M.16.12 [AHJL]
833287
833360
+
Asp
GTC
[ENA]
¡û
>W1610840039
LPRC01000002
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-01 [LPRC]
358630
358704
+
Asp
GTC
[ENA]
¡û
>W1610840066
LPRD01000003
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-02 [LPRD]
191252
191326
+
Asp
GTC
[ENA]
¡û
>W1610840087
LPRE01000001
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-03 [LPRE]
605596
605670
+
Asp
GTC
[ENA]
¡û
>W1610840123
LPRF01000003
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-04 [LPRF]
186451
186377
-
Asp
GTC
[ENA]
¡û
>W1610840140
LPRG01000006
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-05 [LPRG]
281194
281268
+
Asp
GTC
[ENA]
¡û
>W1610840161
LPRH01000001
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-07 [LPRH]
350129
350203
+
Asp
GTC
[ENA]
¡û
>W1610840186
LPRI01000001
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-08 [LPRI]
390642
390716
+
Asp
GTC
[ENA]
¡û
>W1610840223
LPRJ01000005
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-10 [LPRJ]
240940
240866
-
Asp
GTC
[ENA]
¡û
>W1610840243
LPRK01000002
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-11 [LPRK]
1543941
1544015
+
Asp
GTC
[ENA]
¡û
>W1610840262
LPRL01000001
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-12 [LPRL]
827266
827340
+
Asp
GTC
[ENA]
¡û
>W1610840291
LPRM01000002
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-13 [LPRM]
607377
607451
+
Asp
GTC
[ENA]
¡û
>W1610840310
LPRN01000001
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-14 [LPRN]
389736
389810
+
Asp
GTC
[ENA]
¡û
>W1610840335
LPRO01000001
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-15 [LPRO]
416328
416402
+
Asp
GTC
[ENA]
¡û
>W1610840366
LPRP01000003
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-16 [LPRP]
607692
607766
+
Asp
GTC
[ENA]
¡û
>W1610840385
LPRQ01000001
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-17 [LPRQ]
389807
389881
+
Asp
GTC
[ENA]
¡û
>W1610840425
LPRR01000001
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-18 [LPRR]
677872
677798
-
Asp
GTC
[ENA]
¡û
>W1610840437
LPRS01000002
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-20 [LPRS]
607573
607647
+
Asp
GTC
[ENA]
¡û
>W1610840462
LPRT01000002
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-21 [LPRT]
607361
607435
+
Asp
GTC
[ENA]
¡û
>W1610840485
LPRU01000001
Thermoproteota
Sulfolobus acidocaldarius GG12-C01-22 [LPRU]
358233
358307
+
Asp
GTC
[ENA]
¡û
>W1610840513
LPRV01000005
Thermoproteota
Sulfolobus acidocaldarius NG05A_C04 [LPRV]
89525
89599
+
Asp
GTC
[ENA]
¡û
>W1610840538
LPRW01000004
Thermoproteota
Sulfolobus acidocaldarius NG05A_C05_01 [LPRW]
358219
358293
+
Asp
GTC
[ENA]
¡û
>W1610840560
LPRX01000001
Thermoproteota
Sulfolobus acidocaldarius NG05B_C03_01 [LPRX]
865596
865670
+
Asp
GTC
[ENA]
¡û
>W1610840587
LPRY01000006
Thermoproteota
Sulfolobus acidocaldarius NG05B_C06_02 [LPRY]
317091
317165
+
Asp
GTC
[ENA]
¡û
>W1610840614
LPRZ01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_C06_03 [LPRZ]
43555
43629
+
Asp
GTC
[ENA]
¡û
>W1610840634
LPSA01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_C06_04 [LPSA]
247532
247606
+
Asp
GTC
[ENA]
¡û
>W1610840661
LPSB01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_C06_05 [LPSB]
201459
201533
+
Asp
GTC
[ENA]
¡û
>W1610840686
LPSC01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_C06_06 [LPSC]
390222
390296
+
Asp
GTC
[ENA]
¡û
>W1610840711
LPSD01000001
Thermoproteota
Sulfolobus acidocaldarius NG05B_C06_07 [LPSD]
483904
483978
+
Asp
GTC
[ENA]
¡û
>W1610840736
LPSE01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_C06_11 [LPSE]
434736
434810
+
Asp
GTC
[ENA]
¡û
>W1610840766
LPSF01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_C06_12 [LPSF]
607725
607799
+
Asp
GTC
[ENA]
¡û
>W1610840787
LPSG01000001
Thermoproteota
Sulfolobus acidocaldarius NG05B_C06_13 [LPSG]
609211
609285
+
Asp
GTC
[ENA]
¡û
>W1610840814
LPSH01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_01 [LPSH]
126785
126859
+
Asp
GTC
[ENA]
¡û
>W1610840851
LPSI01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_02 [LPSI]
494860
494786
-
Asp
GTC
[ENA]
¡û
>W1610840871
LPSJ01000001
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_03 [LPSJ]
601470
601396
-
Asp
GTC
[ENA]
¡û
>W1610840888
LPSK01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_04 [LPSK]
390255
390329
+
Asp
GTC
[ENA]
¡û
>W1610840915
LPSL01000001
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_05 [LPSL]
483772
483846
+
Asp
GTC
[ENA]
¡û
>W1610840940
LPSM01000001
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_06 [LPSM]
426905
426979
+
Asp
GTC
[ENA]
¡û
>W1610840967
LPSN01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_08 [LPSN]
358597
358671
+
Asp
GTC
[ENA]
¡û
>W1610840992
LPSO01000001
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_09 [LPSO]
714471
714545
+
Asp
GTC
[ENA]
¡û
>W1610841022
LPSP01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_10 [LPSP]
642406
642480
+
Asp
GTC
[ENA]
¡û
>W1610841041
LPSQ01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_11 [LPSQ]
89378
89452
+
Asp
GTC
[ENA]
¡û
>W1610841067
LPSR01000001
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_12 [LPSR]
607675
607749
+
Asp
GTC
[ENA]
¡û
>W1610841092
LPSS01000001
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_13 [LPSS]
827290
827364
+
Asp
GTC
[ENA]
¡û
>W1610841121
LPST01000002
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_14 [LPST]
486283
486357
+
Asp
GTC
[ENA]
¡û
>W1610841157
LPSU01000004
Thermoproteota
Sulfolobus acidocaldarius NG05B_CO5_15 [LPSU]
1247832
1247906
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK