This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283545 (45 seq.)
>WENV180203977
OBAG01122533
[OBAG] human gut metagenome; human gut
237
162
-
Asn
GTT
[ENA]
¡û
>WENV180468955
OBYM01000125
[OBYM] human gut metagenome; faeces
51534
51459
-
Asn
GTT
[ENA]
¡û
>WENV180677861
OCVV011806529
[OCVV] gut metagenome; gut
230
155
-
Asn
GTT
[ENA]
¡û
>WENV180677862
OCVV011806529
[OCVV] gut metagenome; gut
230
155
-
Asn
GTT
[ENA]
¡û
>WENV180716032
ODFW01161353
[ODFW] human metagenome; G_DNA_Stool
162
237
+
Asn
GTT
[ENA]
¡û
>WENV180753721
ODHT01038442
[ODHT] human metagenome; G_DNA_Stool
777
702
-
Asn
GTT
[ENA]
¡û
>WENV180762723
ODHZ01284631
[ODHZ] human metagenome; G_DNA_Stool
92
167
+
Asn
GTT
[ENA]
¡û
>WENV180926818
ODTL01047485
[ODTL] human metagenome; G_DNA_Stool
18
93
+
Asn
GTT
[ENA]
¡û
>WENV180963336
ODUN01131382
[ODUN] human metagenome; G_DNA_Stool
306
381
+
Asn
GTT
[ENA]
¡û
>WENV181149259
OEHT01039026
[OEHT] human metagenome; G_DNA_Stool
475
400
-
Asn
GTT
[ENA]
¡û
>WENV181262323
OFFY01003133
[OFFY] mouse gut metagenome; faeces
281
355
+
Asn
GTT
[ENA]
¡û
>WENV181349229
OFMN01027768
[OFMN] human gut metagenome; human gut
552
627
+
Asn
GTT
[ENA]
¡û
>WENV181427440
OGCQ01094577
[OGCQ] human gut metagenome; human gut
131
206
+
Asn
GTT
[ENA]
¡û
>WENV181775934
OGRF01054557
[OGRF] human gut metagenome; faeces
618
543
-
Asn
GTT
[ENA]
¡û
>WENV183049888
OLGH01037903
[OLGH] human gut metagenome; faeces
754
679
-
Asn
GTT
[ENA]
¡û
>WENV183152836
OLOQ01015763
[OLOQ] human gut metagenome; faeces
2635
2560
-
Asn
GTT
[ENA]
¡û
>WENV183201412
OLPW01028902
[OLPW] human gut metagenome; faeces
1204
1129
-
Asn
GTT
[ENA]
¡û
>WENV183251549
OLRH01089684
[OLRH] human gut metagenome; faeces
13
88
+
Asn
GTT
[ENA]
¡û
>WENV183276647
OLRZ01015878
[OLRZ] human gut metagenome; faeces
1951
1876
-
Asn
GTT
[ENA]
¡û
>WENV183288325
OLSF01071124
[OLSF] human gut metagenome; faeces
441
366
-
Asn
GTT
[ENA]
¡û
>WENV183326347
OLVZ01011239
[OLVZ] human gut metagenome; faeces
708
783
+
Asn
GTT
[ENA]
¡û
>WENV183767530
PPYE01373813
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
716
791
+
Asn
GTT
[ENA]
¡û
>WENV170027419
CDTY01030413
[CDTY] gut metagenome; human stools
35
110
+
Asn
GTT
[ENA]
¡û
>WENV170027554
CDTY01036095
[CDTY] gut metagenome; human stools
87
162
+
Asn
GTT
[ENA]
¡û
>WENV170563393
CZCB01016912
[CZCB] anaerobic digester metagenome; anaerobic digester
4
79
+
Asn
GTT
[ENA]
¡û
>WENV170686436
LFRM01144219
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
63
138
+
Asn
GTT
[ENA]
¡û
>WENV170690544
LFRM01347332
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
264
339
+
Asn
GTT
[ENA]
¡û
>WENV170784121
MCHG01000019
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
83
158
+
Asn
GTT
[ENA]
¡û
>WENV170784189
MCHG01000102
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
33061
32986
-
Asn
GTT
[ENA]
¡û
>C191031568
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
2945403
2945328
-
Asn
GTT
-
¡û
>C191031578
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
2264611
2264536
-
Asn
GTT
-
¡û
>C191031623
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
3070896
3070821
-
Asn
GTT
-
¡û
>C191031633
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
2387651
2387576
-
Asn
GTT
-
¡û
>C191072234
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
2980285
2980210
-
Asn
GTT
-
¡û
>C191072244
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
2299479
2299404
-
Asn
GTT
-
¡û
>C151102729
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
119875
119950
+
Asn
GTT
[Ensembl]
¡û
>W10115294
ADJQ01000011
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
86332
86257
-
Asn
GTT
[ENA]
¡û
>W10115309
ADJQ01000028
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
30799
30724
-
Asn
GTT
[ENA]
¡û
>W10115317
ADJQ01000068
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
1042
1117
+
Asn
GTT
[ENA]
¡û
>C11108761
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
2979683
2979608
-
Asn
GTT
[Ensembl]
¡û
>C11108771
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
2299480
2299405
-
Asn
GTT
[Ensembl]
¡û
>W11118880
ADJQ01000011
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
86332
86257
-
Asn
GTT
[ENA]
¡û
>W11118895
ADJQ01000028
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
30799
30724
-
Asn
GTT
[ENA]
¡û
>W11118903
ADJQ01000068
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
1042
1117
+
Asn
GTT
[ENA]
¡û
>W1610605939
LFSK01000063
Bacillota
Clostridiaceae bacterium DTU059 [LFSK]
63
138
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK