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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283896 (49 seq.)
>W131221959
AUAX01000003
Actinomycetota
Hamadaea tsunoensis DSM 44101 [AUAX]
328909
328982
+
Thr
CGT
[ENA]
¡û
>W1711491887
MKJY01000222
Actinomycetota
Actinomadura sp. CNU-125 [MKJY]
97395
97320
-
Thr
CGT
[ENA]
¡û
>W1711492095
MKKC01000109
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
57562
57635
+
Thr
CGT
[ENA]
¡û
>C171070710
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
561399
561474
+
Thr
CGT
-
¡û
>C171118554
CP021383
Actinomycetota
Cellulosimicrobium cellulans PSBB019 [CP021383]
2786143
2786218
+
Thr
CGT
-
¡û
>W131053486
ANAC01000011
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
520121
520194
+
Thr
CGT
[ENA]
¡û
>W131053573
ANAE01000079
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
109645
109720
+
Thr
CGT
[ENA]
¡û
>W131054685
ANAY01000011
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
16243
16318
+
Thr
CGT
[ENA]
¡û
>W131054743
ANAZ01000002
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
134054
133981
-
Thr
CGT
[ENA]
¡û
>W131054811
ANBA01000013
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
155892
155967
+
Thr
CGT
[ENA]
¡û
>W131054968
ANBD01000046
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
10575
10650
+
Thr
CGT
[ENA]
¡û
>W131055042
ANBE01000031
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
83234
83159
-
Thr
CGT
[ENA]
¡û
>W131170529
ARFO01000024
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
1832743
1832818
+
Thr
CGT
[ENA]
¡û
>W131179864
ARMS01000039
Actinomycetota
Actinomadura atramentaria DSM 43919 [ARMS]
365016
365091
+
Thr
CGT
[ENA]
¡û
>W131234794
AULB01000021
Actinomycetota
Actinomadura rifamycini DSM 43936 [AULB]
140325
140250
-
Thr
CGT
[ENA]
¡û
>WENV180018030
FSXZ01002342
[FSXZ] metagenome; soil
11518
11595
+
Thr
CGT
[ENA]
¢þ
>W141236328
BAZE01000003
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
290943
290870
-
Thr
CGT
[ENA]
¡û
>W141275784
JADG01000013
Actinomycetota
Actinomadura oligospora ATCC 43269 [JADG]
139683
139758
+
Thr
CGT
[ENA]
¡û
>WENV170564716
CZKW01000392
[CZKW] soil metagenome genome assembly CiPEHR-AK-2010-FBin.13, contig:; soil
2920
2845
-
Thr
CGT
[ENA]
¢þ
>WENV170690732
LFRM01358951
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
327
402
+
Thr
CGT
[ENA]
¢þ
>C181062032
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
1099281
1099206
-
Thr
CGT
-
¡û
>C181084610
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
1370463
1370537
+
Thr
CGT
-
¡û
>W09109955
ABUS01000002
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [ABUS]
1263767
1263692
-
Thr
CGT
[ENA]
¡û
>W141758098
JNYJ01000038
Actinomycetota
Dactylosporangium aurantiacum [JNYJ]
110157
110230
+
Thr
CGT
[ENA]
¡û
>W141760259
JNZX01000930
Actinomycetota
Dactylosporangium aurantiacum [JNZX]
2026
2099
+
Thr
CGT
[ENA]
¡û
>W141768687
JOFJ01000010
Actinomycetota
Spirillospora albida [JOFJ]
105862
105787
-
Thr
CGT
[ENA]
¡û
>W1910285476
FRFF01000169
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
28104
28179
+
Thr
CGT
[ENA]
¡û
>W1910547204
FZNP01000002
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
12741
12668
-
Thr
CGT
[ENA]
¡û
>W1910803630
MTBP01000001
Actinomycetota
Actinomadura rubteroloni 5·î2Æü [MTBP]
1180465
1180539
+
Thr
CGT
[ENA]
¡û
>W1911678964
QHJN01000071
Actinomycetota
Actinomadura sp. WAC 06369 [QHJN]
29563
29638
+
Thr
CGT
[ENA]
¡û
>W1810608312
QGTF01000007
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
168225
168300
+
Thr
CGT
[ENA]
¡û
>W1810698077
QLYX01000004
Actinomycetota
Actinomadura craniellae LHW63021 [QLYX]
477389
477314
-
Thr
CGT
[ENA]
¡û
>W1810861259
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
3740608
3740683
+
Thr
CGT
[ENA]
¡û
>W1810888860
QURH01000012
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
5058
4984
-
Thr
CGT
[ENA]
¡û
>C10112163
CP001778
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [CP001778]
6585673
6585748
+
Thr
CGT
[Ensembl]
¡û
>W1510456332
CPWZ01000034
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
27119
27044
-
Thr
CGT
[ENA]
¡û
>W1511584555
LAVM01000024
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
45491
45416
-
Thr
CGT
[ENA]
¡û
>W1610067631
BCQS01000003
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
571931
572006
+
Thr
CGT
[ENA]
¡û
>W1610067734
BCQT01000023
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
196406
196331
-
Thr
CGT
[ENA]
¡û
>W1610068735
BCRO01000037
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
33280
33205
-
Thr
CGT
[ENA]
¡û
>W1610069237
BCSH01000088
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
9866
9791
-
Thr
CGT
[ENA]
¡û
>C131006717
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
2656671
2656744
+
Thr
CGT
[Ensembl]
¡û
>W1710065004
BCQS01000003
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
571931
572006
+
Thr
CGT
[ENA]
¡û
>W1710065107
BCQT01000023
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
196406
196331
-
Thr
CGT
[ENA]
¡û
>W1710066108
BCRO01000037
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
33280
33205
-
Thr
CGT
[ENA]
¡û
>W1710066610
BCSH01000088
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
9866
9791
-
Thr
CGT
[ENA]
¡û
>W1710537596
FNTX01000002
Actinomycetota
Ruania alba album [FNTX]
1619253
1619328
+
Thr
CGT
[ENA]
¡û
>W1710539606
FNVO01000004
Actinomycetota
Thermomonospora echinospora [FNVO]
183143
183218
+
Thr
CGT
[ENA]
¡û
>W1710604067
FUZQ01000006
Actinomycetota
Krasilnikoviella flava [FUZQ]
97602
97527
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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