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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284259 (105 seq.)
>W1710865596
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
1198807
1198732
-
Ala
CGC
[ENA]
¡û
>W1710883815
LMWF01000031
Actinomycetota
Streptomyces rimosus subsp. rimosus [LMWF]
14398
14471
+
Ala
CGC
[ENA]
¡û
>W1710887785
LMZE01000273
Actinomycetota
Streptomyces albus subsp. albus [LMZE]
2368
2295
-
Ala
CGC
[ENA]
¡û
>W1711183378
LWKZ01000028
Actinomycetota
Streptomyces sp. CB02923 [LWKZ]
237510
237435
-
Ala
CGC
[ENA]
¡û
>W1711427934
MIGA01000080
Actinomycetota
Streptomyces platensis [MIGA]
17747
17820
+
Ala
CGC
[ENA]
¡û
>C171058135
CP017157
Actinomycetota
Streptomyces lydicus 103 [CP017157]
766893
766966
+
Ala
CGC
-
¡û
>C171094682
CP019457
Actinomycetota
Streptomyces lydicus GS93 [CP019457]
3648054
3647981
-
Ala
CGC
-
¡û
>C171099664
CP019779
Actinomycetota
Streptomyces sp. MOE7 [CP019779]
3767624
3767551
-
Ala
CGC
-
¡û
>W131070567
ANSJ01000006
Actinomycetota
Streptomyces rimosus subsp. rimosus ATCC 10970 [ANSJ]
48261
48334
+
Ala
CGC
[ENA]
¡û
>W131160447
AQWO01000013
Actinomycetota
Streptomyces sp. FxanaC1 [AQWO]
98029
97956
-
Ala
CGC
[ENA]
¡û
>W131234242
AUKQ01000002
Actinomycetota
Streptomyces sp. CNH287 [AUKQ]
390546
390621
+
Ala
CGC
[ENA]
¡û
>W131234317
AUKR01000009
Actinomycetota
Streptomyces sp. TAA040 [AUKR]
39644
39719
+
Ala
CGC
[ENA]
¡û
>WENV181390518
OFRO01058192
[OFRO] wastewater metagenome; Exp Tend NO 10WW
708
632
-
Ala
CGC
[ENA]
¢þ
>WENV170552123
CXWJ01040323
[CXWJ] wastewater metagenome; activated sludge
3275
3202
-
Ala
CGC
[ENA]
¢þ
>C181179801
CP029541
Actinomycetota
Streptomyces sp. NEAU-S7GS2 [CP029541]
4223984
4223911
-
Ala
CGC
-
¡û
>C191036474
CP025551
Actinomycetota
Streptomyces rimosus WT5260 [CP025551]
5524468
5524541
+
Ala
CGC
-
¡û
>C191062894
CP029042
Actinomycetota
Streptomyces lydicus WYEC 108 [CP029042]
3881633
3881560
-
Ala
CGC
-
¡û
>W141621334
JJNO01000009
Actinomycetota
Streptomyces rimosus R6-500 [JJNO]
207675
207748
+
Ala
CGC
[ENA]
¡û
>W141697549
JMGX01000057
Actinomycetota
Streptomyces rimosus [JMGX]
2422
2349
-
Ala
CGC
[ENA]
¡û
>W141697577
JMGY01000006
Actinomycetota
Streptomyces rimosus [JMGY]
275147
275220
+
Ala
CGC
[ENA]
¡û
>W141755398
JNWN01000078
Actinomycetota
Streptomyces sp. NRRL B-11253 [JNWN]
2445
2372
-
Ala
CGC
[ENA]
¡û
>W141755530
JNWP01000076
Actinomycetota
Streptomyces capuensis [JNWP]
14593
14666
+
Ala
CGC
[ENA]
¡û
>W141756028
JNWX01000037
Actinomycetota
Streptomyces rimosus subsp. rimosus [JNWX]
2456
2383
-
Ala
CGC
[ENA]
¡û
>W141757464
JNXX01000738
Actinomycetota
Streptomyces rimosus subsp. rimosus [JNXX]
1948
2021
+
Ala
CGC
[ENA]
¡û
>W141757587
JNXZ01003439
Actinomycetota
Streptomyces rimosus subsp. pseudoverticillatus [JNXZ]
1345
1272
-
Ala
CGC
[ENA]
¡û
>W141757877
JNYF01000938
Actinomycetota
Streptomyces natalensis [JNYF]
1800
1725
-
Ala
CGC
[ENA]
¡û
>W141757933
JNYG01001463
Actinomycetota
Streptomyces decoyicus [JNYG]
3448
3375
-
Ala
CGC
[ENA]
¡û
>W141758137
JNYK01000015
Actinomycetota
Streptomyces rimosus subsp. rimosus [JNYK]
2434
2361
-
Ala
CGC
[ENA]
¡û
>W141758225
JNYL01000573
Actinomycetota
Streptomyces monomycini [JNYL]
238
313
+
Ala
CGC
[ENA]
¡û
>W141758554
JNYR01000009
Actinomycetota
Streptomyces rimosus subsp. rimosus [JNYR]
61280
61207
-
Ala
CGC
[ENA]
¡û
>W141759002
JNZA01000007
Actinomycetota
Streptomyces lydicus [JNZA]
13801
13874
+
Ala
CGC
[ENA]
¡û
>W141761693
JOAX01000002
Actinomycetota
Streptomyces ochraceiscleroticus [JOAX]
346837
346910
+
Ala
CGC
[ENA]
¡û
>W141761981
JOBC01000014
Actinomycetota
Streptomyces sclerotialus [JOBC]
95042
95117
+
Ala
CGC
[ENA]
¡û
>W141762327
JOBH01000013
Actinomycetota
Streptomyces violens [JOBH]
69582
69655
+
Ala
CGC
[ENA]
¡û
>W141762592
JOBN01000012
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOBN]
512581
512654
+
Ala
CGC
[ENA]
¡û
>W141762657
JOBO01000012
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOBO]
332358
332431
+
Ala
CGC
[ENA]
¡û
>W141762703
JOBP01000008
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOBP]
232344
232271
-
Ala
CGC
[ENA]
¡û
>W141762917
JOBS01000019
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOBS]
2449
2376
-
Ala
CGC
[ENA]
¡û
>W141762986
JOBT01000330
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOBT]
36040
36113
+
Ala
CGC
[ENA]
¡û
>W141763087
JOBV01000031
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOBV]
158778
158851
+
Ala
CGC
[ENA]
¡û
>W141763180
JOBW01000108
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOBW]
14615
14688
+
Ala
CGC
[ENA]
¡û
>W141763280
JOBY01003574
Actinomycetota
Streptomyces thermotolerans [JOBY]
4528
4453
-
Ala
CGC
[ENA]
¡û
>W141763545
JOCC01000114
Actinomycetota
Streptomyces sp. NRRL WC-3702 [JOCC]
14613
14686
+
Ala
CGC
[ENA]
¡û
>W141763867
JOCH01000099
Actinomycetota
Streptomyces sp. NRRL WC-3703 [JOCH]
14582
14655
+
Ala
CGC
[ENA]
¡û
>W141764000
JOCK01000013
Actinomycetota
Streptomyces peucetius [JOCK]
229329
229256
-
Ala
CGC
[ENA]
¡û
>W141764071
JOCL01000018
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOCL]
2436
2363
-
Ala
CGC
[ENA]
¡û
>W141764141
JOCM01000043
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOCM]
60168
60241
+
Ala
CGC
[ENA]
¡û
>W141764171
JOCN01000006
Actinomycetota
Streptomyces lavendulae subsp. lavendulae [JOCN]
182528
182455
-
Ala
CGC
[ENA]
¡û
>W141764243
JOCO01000018
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOCO]
133194
133267
+
Ala
CGC
[ENA]
¡û
>W141764306
JOCP01000040
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOCP]
133180
133253
+
Ala
CGC
[ENA]
¡û
>W141764367
JOCQ01000108
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOCQ]
5978
5903
-
Ala
CGC
[ENA]
¡û
>W141764449
JOCR01000112
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOCR]
14586
14659
+
Ala
CGC
[ENA]
¡û
>W141766382
JODY01000008
Actinomycetota
Streptomyces catenulae [JODY]
44027
44102
+
Ala
CGC
[ENA]
¡û
>W141767381
JOEO01000081
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOEO]
14627
14700
+
Ala
CGC
[ENA]
¡û
>W141767617
JOES01000083
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOES]
34577
34650
+
Ala
CGC
[ENA]
¡û
>W141767672
JOET01000047
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOET]
66419
66492
+
Ala
CGC
[ENA]
¡û
>W141767928
JOEX01000023
Actinomycetota
Streptomyces lavendulae subsp. lavendulae [JOEX]
2444
2371
-
Ala
CGC
[ENA]
¡û
>W141768917
JOFM01000111
Actinomycetota
Streptomyces capuensis [JOFM]
2606
2679
+
Ala
CGC
[ENA]
¡û
>W141769106
JOFQ01000004
Actinomycetota
Streptomyces niger [JOFQ]
126419
126344
-
Ala
CGC
[ENA]
¡û
>W141769974
JOGE01000035
Actinomycetota
Streptomyces sp. NRRL S-1448 [JOGE]
34116
34189
+
Ala
CGC
[ENA]
¡û
>W141771293
JOHB01000007
Actinomycetota
Streptomyces sp. NRRL S-1813 [JOHB]
159111
159038
-
Ala
CGC
[ENA]
¡û
>W141774159
JOIX01000030
Actinomycetota
Streptomyces sp. NRRL S-337 [JOIX]
23683
23610
-
Ala
CGC
[ENA]
¡û
>W141774910
JOJI01000090
Actinomycetota
Streptomyces sp. NRRL WC-3773 [JOJI]
4786
4711
-
Ala
CGC
[ENA]
¡û
>W141774992
JOJJ01000076
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOJJ]
2379
2306
-
Ala
CGC
[ENA]
¡û
>W1910129441
BHZC01000001
Actinomycetota
Streptomyces chrestomyceticus NBRC 13444 [BHZC]
5523335
5523409
+
Ala
CGC
[ENA]
¡û
>W1910129505
BHZD01000001
Actinomycetota
Streptomyces paromomycinus subsp. paromomycinus NBRC 15454 [BHZD]
5733362
5733436
+
Ala
CGC
[ENA]
¡û
>W1910596027
LACP01000015
Actinomycetota
Streptomyces sp. SceaMP-e96 [LACP]
2487
2414
-
Ala
CGC
[ENA]
¡û
>W1911243889
NSGX01000001
Actinomycetota
Streptomyces sp. 2321.6 [NSGX]
3240813
3240740
-
Ala
CGC
[ENA]
¡û
>W1911679063
QHJO01000723
Actinomycetota
Streptomyces sp. WAC 06725 [QHJO]
138
211
+
Ala
CGC
[ENA]
¡û
>W1911679093
QHJP01000015
Actinomycetota
Streptomyces sp. WAC 06783 [QHJP]
148931
149004
+
Ala
CGC
[ENA]
¡û
>W1911765894
QXDE01000001
Actinomycetota
Streptomyces sp. 2233.2 [QXDE]
4031845
4031918
+
Ala
CGC
[ENA]
¡û
>W1810072370
PEFH01000001
Actinomycetota
Streptomyces sp. 76 [PEFH]
2370967
2370894
-
Ala
CGC
[ENA]
¡û
>W1810072406
PEFI01000001
Actinomycetota
Streptomyces sp. 2233.5 [PEFI]
4718869
4718942
+
Ala
CGC
[ENA]
¡û
>W1810089196
PGEO01000001
Actinomycetota
Streptomyces sp. 2333.5 [PGEO]
3320022
3319949
-
Ala
CGC
[ENA]
¡û
>W1810262267
PQSQ01000013
Actinomycetota
Streptomyces sp. Ru73 [PQSQ]
42119
42193
+
Ala
CGC
[ENA]
¡û
>W1810869770
QUAC01000002
Actinomycetota
Streptomyces inhibens NEAU-D10 [QUAC]
17210
17283
+
Ala
CGC
[ENA]
¡û
>C151032437
CP007699
Actinomycetota
Streptomyces lydicus A02 [CP007699]
5190861
5190934
+
Ala
CGC
[Ensembl]
¡û
>W1510012807
BBNO01000005
Actinomycetota
Streptomyces lydicamycinicus NBRC 110027 [BBNO]
382957
383030
+
Ala
CGC
[ENA]
¡û
>W1511695064
LGCO01000037
Actinomycetota
Streptomyces rimosus subsp. rimosus NRRL WC-3909 [LGCO]
14576
14649
+
Ala
CGC
[ENA]
¡û
>W1511695113
LGCP01000031
Actinomycetota
Streptomyces sp. NRRL WC-3701 [LGCP]
14575
14648
+
Ala
CGC
[ENA]
¡û
>W1511695181
LGCQ01000043
Actinomycetota
Streptomyces rimosus subsp. rimosus NRRL WC-3869 [LGCQ]
2435
2362
-
Ala
CGC
[ENA]
¡û
>W1511695257
LGCR01000044
Actinomycetota
Streptomyces rimosus subsp. rimosus NRRL WC-3875 [LGCR]
14386
14459
+
Ala
CGC
[ENA]
¡û
>W1511695326
LGCS01000057
Actinomycetota
Streptomyces rimosus subsp. rimosus NRRL WC-3873 [LGCS]
14581
14654
+
Ala
CGC
[ENA]
¡û
>W1511695374
LGCT01000043
Actinomycetota
Streptomyces rimosus subsp. rimosus NRRL WC-3899 [LGCT]
14587
14660
+
Ala
CGC
[ENA]
¡û
>W1511695440
LGCU01000048
Actinomycetota
Streptomyces rimosus subsp. rimosus NRRL WC-3898 [LGCU]
14492
14565
+
Ala
CGC
[ENA]
¡û
>W1511695496
LGCV01000068
Actinomycetota
Streptomyces rimosus subsp. pseudoverticillatus NRRL WC-3896 [LGCV]
2426
2353
-
Ala
CGC
[ENA]
¡û
>W1511695555
LGCW01000023
Actinomycetota
Streptomyces sp. NRRL F-5755 [LGCW]
26600
26673
+
Ala
CGC
[ENA]
¡û
>W1511707047
LGUU01000107
Actinomycetota
Streptomyces decoyicus NRRL 2666 [LGUU]
2154
2081
-
Ala
CGC
[ENA]
¡û
>W1511707170
LGUW01000065
Actinomycetota
Streptomyces griseoflavus NRRL B-1830 [LGUW]
15921
15994
+
Ala
CGC
[ENA]
¡û
>W1511707284
LGUY01000014
Actinomycetota
Kitasatospora aureofaciens NRRL B-2658 [LGUY]
14582
14655
+
Ala
CGC
[ENA]
¡û
>W121061466
AJGV01000104
Actinomycetota
Streptomyces auratus AGR0001 [AJGV]
17505
17578
+
Ala
CGC
[ENA]
¡û
>W1610614945
LGKG01000134
Actinomycetota
Streptomyces chattanoogensis [LGKG]
40116
40189
+
Ala
CGC
[ENA]
¡û
>W1610727942
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
1198807
1198732
-
Ala
CGC
[ENA]
¡û
>W1610745741
LMWF01000031
Actinomycetota
Streptomyces rimosus subsp. rimosus [LMWF]
14398
14471
+
Ala
CGC
[ENA]
¡û
>W1610748485
LMZE01000273
Actinomycetota
Streptomyces albus subsp. albus [LMZE]
2368
2295
-
Ala
CGC
[ENA]
¡û
>W1710503842
FMHL01000012
Actinomycetota
Streptomyces sp. SceaMP-e96 [FMHL]
2487
2414
-
Ala
CGC
[ENA]
¡û
>W1710526957
FNKS01000001
Actinomycetota
Streptomyces sp. KS_16 [FNKS]
4754647
4754720
+
Ala
CGC
[ENA]
¡û
>W1710534736
FNSB01000001
Actinomycetota
Streptomyces sp. 2224.1 [FNSB]
2673474
2673547
+
Ala
CGC
[ENA]
¡û
>W1710535058
FNSG01000001
Actinomycetota
Streptomyces sp. 2112.2 [FNSG]
3402584
3402511
-
Ala
CGC
[ENA]
¡û
>W1710535202
FNSJ01000001
Actinomycetota
Streptomyces sp. 2314.4 [FNSJ]
3475734
3475661
-
Ala
CGC
[ENA]
¡û
>W1710536906
FNTM01000001
Actinomycetota
Streptomyces sp. 2133.1 [FNTM]
3243587
3243514
-
Ala
CGC
[ENA]
¡û
>W1710537060
FNTP01000001
Actinomycetota
Streptomyces sp. 2112.3 [FNTP]
4794687
4794760
+
Ala
CGC
[ENA]
¡û
>W1710575730
FOZJ01000003
Actinomycetota
Microbacterium sp. cf046 [FOZJ]
1224850
1224927
+
Ala
CGC
[ENA]
¡û
>W1710610275
FYEY01000001
Actinomycetota
Streptomyces sp. 2114.4 [FYEY]
3245034
3244961
-
Ala
CGC
[ENA]
¡û
>W1710736191
LGKG01000134
Actinomycetota
Streptomyces chattanoogensis [LGKG]
40116
40189
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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