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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284266 (19 seq.)
>W1710853026
LLWF02000141
Alphaproteobacteria
Roseomonas mucosa [LLWF]
3746
3674
-
Ala
TGC
[ENA]
¡û
>C171039527
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
174293
174365
+
Ala
TGC
-
¡û
>C171039537
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1692350
1692422
+
Ala
TGC
-
¡û
>C171039553
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
3989933
3989861
-
Ala
TGC
-
¡û
>C171039557
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
3486746
3486674
-
Ala
TGC
-
¡û
>C171039571
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
2175237
2175165
-
Ala
TGC
-
¡û
>WENV180086995
MPME02039172
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
258
333
+
Ala
TGC
[ENA]
¢þ
>WENV170771581
LXNI01002121
[LXNI] sponge metagenome; marine sponge reef
11944
12019
+
Ala
TGC
[ENA]
¢þ
>C181102012
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
617248
617320
+
Ala
TGC
-
¡û
>C181102027
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
3261299
3261371
+
Ala
TGC
-
¡û
>C181102039
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
2825371
2825299
-
Ala
TGC
-
¡û
>C181102043
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
2129921
2129849
-
Ala
TGC
-
¡û
>C181102050
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
1078137
1078065
-
Ala
TGC
-
¡û
>W141558741
JHWD01000071
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
1822
1894
+
Ala
TGC
[ENA]
¡û
>SRA1005798
SRR014587.168039
Metagenomic analysis of viruses in reclaimed water (SRP000673)
135
207
+
Ala
TGC
[SRA]
>W1810684789
QKYU01000056
Alphaproteobacteria
Humitalea rosea DSM 24525 [QKYU]
2245
2319
+
Ala
TGC
[ENA]
¡û
>W121113838
ALOX01000016
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
3734
3662
-
Ala
TGC
[ENA]
¡û
>W1610716151
LLWF01000379
Alphaproteobacteria
Roseomonas mucosa [LLWF]
2356
2428
+
Ala
TGC
[ENA]
¡û
>W1710084292
BDLP01000288
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
2121
2193
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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