This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285374 (16 seq.)
>WENV180220895
OBAX01000090
[OBAX] human gut metagenome; human gut
1554
1479
-
Arg
TCT
[ENA]
¡û
>WENV180246447
OBDP01000106
[OBDP] human gut metagenome; human gut
2115
2040
-
Arg
TCT
[ENA]
¡û
>WENV180544219
OCIP01018820
[OCIP] human gut metagenome; human gut
346
271
-
Arg
TCT
[ENA]
¡û
>WENV180545292
OCIT01000492
[OCIT] human gut metagenome; human gut
1769
1694
-
Arg
TCT
[ENA]
¡û
>WENV183232576
OLQU01026932
[OLQU] human gut metagenome; faeces
683
758
+
Arg
TCT
[ENA]
¡û
>WENV183507597
OMGY01035981
[OMGY] human gut metagenome; human gut
109
34
-
Arg
TCT
[ENA]
¡û
>At1594
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
1703981
1703907
-
Arg
TCT
[Ensembl]
¡û
>W1910635156
LMVN01000001
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
137713
137788
+
Arg
TCT
[ENA]
¡û
>W1910646625
LWMS01000020
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
137851
137926
+
Arg
TCT
[ENA]
¡û
>W1910656127
MAIF01000101
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
16476
16401
-
Arg
TCT
[ENA]
¡û
>W1910899169
NGJK01000093
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
42204
42129
-
Arg
TCT
[ENA]
¡û
>A241000471
CP014213
Methanobacteriota
Methanosphaera sp. BMS [CP014213]
2127435
2127360
-
Arg
TCT
-
¡û
>W2010782186
LMVN01000001
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
137713
137788
+
Arg
TCT
[ENA]
¡û
>W2010791869
LWMS01000020
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
137851
137926
+
Arg
TCT
[ENA]
¡û
>W2010803275
MAIF01000101
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
16476
16401
-
Arg
TCT
[ENA]
¡û
>W2010958070
NGJK01000093
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
42204
42129
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK