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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285602 (86 seq.)
>WENV011020
AACY020299766
Marine microbial communities from Global Ocean Sampling (GOS)
621
697
+
Ile
GAT
[ENA]
>WENV011342
AACY020309161
Marine microbial communities from Global Ocean Sampling (GOS)
580
656
+
Ile
GAT
[ENA]
>C171036916
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
1400884
1400808
-
Ile
GAT
-
¡û
>WENV180102695
OAOZ01006028
[OAOZ] marine metagenome; ENVO:00002010
403
329
-
Ile
GAT
[ENA]
¢þ
>WENV180103267
OAPA01011484
[OAPA] marine metagenome; ENVO:00002010
246
320
+
Ile
GAT
[ENA]
¢þ
>WENV180110858
OAPN01010398
[OAPN] marine metagenome; 2011
8
84
+
Ile
GAT
[ENA]
¢þ
>WENV180114572
OAPS01020429
[OAPS] marine metagenome; sea water
611
537
-
Ile
GAT
[ENA]
¢þ
>WENV180208935
OBAK01000237
[OBAK] marine metagenome; ENVO.00002150
2268
2342
+
Ile
GAT
[ENA]
¢þ
>WENV180209581
OBAL01005451
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1441
1367
-
Ile
GAT
[ENA]
¢þ
>WENV180359516
OBNS01001012
[OBNS] marine metagenome; Seawater
455
381
-
Ile
GAT
[ENA]
¢þ
>WENV180360459
OBNU01000035
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
19740
19814
+
Ile
GAT
[ENA]
¢þ
>WENV180361779
OBNW01001092
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
1753
1827
+
Ile
GAT
[ENA]
¢þ
>WENV180364986
OBOB01001697
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
113
187
+
Ile
GAT
[ENA]
¢þ
>WENV180368073
OBOF01022150
[OBOF] marine metagenome; ENVO:00002010
225
299
+
Ile
GAT
[ENA]
¢þ
>WENV180376567
OBOM01028954
[OBOM] marine metagenome; Seawater
319
393
+
Ile
GAT
[ENA]
¢þ
>WENV180382018
OBOS01075389
[OBOS] marine metagenome; ENVO 00002150
454
380
-
Ile
GAT
[ENA]
¢þ
>WENV180391148
OBPM01019871
[OBPM] marine metagenome; ENVO:00002010
152
226
+
Ile
GAT
[ENA]
¢þ
>WENV180391881
OBPN01084693
[OBPN] marine metagenome; seawater
198
272
+
Ile
GAT
[ENA]
¢þ
>WENV180392758
OBPP01007951
[OBPP] marine metagenome; ENVO:00002042
210
284
+
Ile
GAT
[ENA]
¢þ
>WENV180393707
OBPR01002008
[OBPR] marine metagenome; ENVO:00002042
444
370
-
Ile
GAT
[ENA]
¢þ
>WENV180395852
OBPT01194295
[OBPT] marine metagenome; ENVO:00002010 seawater
305
231
-
Ile
GAT
[ENA]
¢þ
>WENV180399132
OBQG01000921
[OBQG] marine metagenome; ENV:00002010
627
553
-
Ile
GAT
[ENA]
¢þ
>WENV180399263
OBQH01000029
[OBQH] marine metagenome; ENV:00002010
2640
2714
+
Ile
GAT
[ENA]
¢þ
>WENV180399483
OBQO01000003
[OBQO] marine metagenome; ENVO:00002010
60436
60510
+
Ile
GAT
[ENA]
¢þ
>WENV180590815
OCOU01014236
[OCOU] marine metagenome; Water
76
2
-
Ile
GAT
[ENA]
¢þ
>WENV180591371
OCOV01015066
[OCOV] marine metagenome; ENVO:01000301
649
575
-
Ile
GAT
[ENA]
¢þ
>WENV180650309
OCSY01005566
[OCSY] marine metagenome; 30 L Plastic container
260
186
-
Ile
GAT
[ENA]
¢þ
>WENV181163209
OEIO01143615
[OEIO] marine metagenome; sea ice
254
180
-
Ile
GAT
[ENA]
¢þ
>WENV181320933
OFKJ01000481
[OFKJ] marine metagenome; sea ice
479
405
-
Ile
GAT
[ENA]
¢þ
>WENV181322032
OFKP01000819
[OFKP] marine metagenome; sea ice
1379
1453
+
Ile
GAT
[ENA]
¢þ
>WENV181323478
OFKY01000769
[OFKY] marine metagenome; sea ice
471
545
+
Ile
GAT
[ENA]
¢þ
>WENV181324136
OFLC01000388
[OFLC] marine metagenome; melt pond
1190
1116
-
Ile
GAT
[ENA]
¢þ
>WENV181324419
OFLE01007309
[OFLE] marine metagenome; sea ice
90
164
+
Ile
GAT
[ENA]
¢þ
>WENV181324491
OFLF01000012
[OFLF] marine metagenome; melt pond
9476
9550
+
Ile
GAT
[ENA]
¢þ
>WENV181325860
OFLJ01036186
[OFLJ] seawater metagenome; seawater
253
327
+
Ile
GAT
[ENA]
¢þ
>WENV181369591
OFQP01010057
[OFQP] freshwater metagenome; Freshwater Lake
460
536
+
Ile
GAT
[ENA]
¢þ
>WENV181369951
OFQR01003130
[OFQR] freshwater metagenome; Freshwater Lake
1188
1264
+
Ile
GAT
[ENA]
¢þ
>WENV181370377
OFQS01006854
[OFQS] freshwater metagenome; Freshwater Lake
239
315
+
Ile
GAT
[ENA]
¢þ
>WENV181839950
OGVO01026349
[OGVO] freshwater metagenome; freshwater
281
207
-
Ile
GAT
[ENA]
¢þ
>WENV181843415
OGVU01013783
[OGVU] freshwater metagenome; freshwater
628
702
+
Ile
GAT
[ENA]
¢þ
>WENV181856024
OGWM01012130
[OGWM] freshwater metagenome; freshwater
259
183
-
Ile
GAT
[ENA]
¢þ
>WENV019134
AACY020526420
Marine microbial communities from Global Ocean Sampling (GOS)
1115
1191
+
Ile
GAT
[ENA]
>WENV019526
AACY020533857
Marine microbial communities from Global Ocean Sampling (GOS)
1219
1295
+
Ile
GAT
[ENA]
>WENV183619714
OOFQ01037156
[OOFQ] marine metagenome; seawater
253
327
+
Ile
GAT
[ENA]
¢þ
>WENV183620913
OOFT01000019
[OOFT] marine metagenome; sea ice
29556
29482
-
Ile
GAT
[ENA]
¢þ
>WENV183624636
OOGD01074239
[OOGD] marine metagenome; sea ice
142
216
+
Ile
GAT
[ENA]
¢þ
>WENV183625484
OOGF01041388
[OOGF] marine metagenome; seawater
425
499
+
Ile
GAT
[ENA]
¢þ
>WENV183625625
OOGG01004361
[OOGG] marine metagenome; sea ice
982
908
-
Ile
GAT
[ENA]
¢þ
>WENV183628768
OOGO01020943
[OOGO] marine metagenome; sea ice
438
364
-
Ile
GAT
[ENA]
¢þ
>WENV170567522
FLMP01001513
[FLMP] seawater metagenome; seawater
387
313
-
Ile
GAT
[ENA]
¢þ
>WENV170597929
FUWD010020036
[FUWD] metagenome; unknown
564
490
-
Ile
GAT
[ENA]
¢þ
>WENV170600577
FUWD010133383
[FUWD] metagenome; unknown
6
82
+
Ile
GAT
[ENA]
¢þ
>WENV170600810
FUWD010143590
[FUWD] metagenome; unknown
306
230
-
Ile
GAT
[ENA]
¢þ
>WENV170615538
FUWD012860461
[FUWD] metagenome; unknown
1231
1305
+
Ile
GAT
[ENA]
¢þ
>WENV170615540
FUWD012860462
[FUWD] metagenome; unknown
597
671
+
Ile
GAT
[ENA]
¢þ
>WENV170618652
FUWD012980062
[FUWD] metagenome; unknown
295
219
-
Ile
GAT
[ENA]
¢þ
>WENV170618654
FUWD012980063
[FUWD] metagenome; unknown
122
46
-
Ile
GAT
[ENA]
¢þ
>WENV170621896
FUWD013078136
[FUWD] metagenome; unknown
422
498
+
Ile
GAT
[ENA]
¢þ
>WENV170624067
FUWD013174594
[FUWD] metagenome; unknown
454
528
+
Ile
GAT
[ENA]
¢þ
>WENV170624139
FUWD013175575
[FUWD] metagenome; unknown
3488
3414
-
Ile
GAT
[ENA]
¢þ
>WENV170630092
FUWD013293505
[FUWD] metagenome; unknown
422
498
+
Ile
GAT
[ENA]
¢þ
>WENV170632354
FUWD013380923
[FUWD] metagenome; unknown
454
528
+
Ile
GAT
[ENA]
¢þ
>WENV170632421
FUWD013381715
[FUWD] metagenome; unknown
3488
3414
-
Ile
GAT
[ENA]
¢þ
>WENV170645651
JNSL01000179
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14
90
+
Ile
GAT
[ENA]
¢þ
>WENV170949882
MEHZ011461820
[MEHZ] marine metagenome; marine surface water
3501
3427
-
Ile
GAT
[ENA]
¢þ
>C191178314
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
10076
10152
+
Ile
GAT
-
¡û
>C191178353
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
10075
10151
+
Ile
GAT
-
¡û
>C191178392
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
10097
10173
+
Ile
GAT
-
¡û
>C151025265
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
11406
11482
+
Ile
GAT
[Ensembl]
¡û
>SRA1023185
SRR035084.30991
454 Sequencing (SRP001805)
277
351
+
Ile
GAT
[SRA]
>SRA1023493
SRR035084.110642
454 Sequencing (SRP001805)
324
398
+
Ile
GAT
[SRA]
>SRA1024704
SRR035084.380461
454 Sequencing (SRP001805)
207
281
+
Ile
GAT
[SRA]
>SRA1024909
SRR035084.434105
454 Sequencing (SRP001805)
127
53
-
Ile
GAT
[SRA]
>SRA1025292
SRR035084.543285
454 Sequencing (SRP001805)
345
271
-
Ile
GAT
[SRA]
>WENV030140
AACY021258589
Marine microbial communities from Global Ocean Sampling (GOS)
442
366
-
Ile
GAT
[ENA]
>SRA1053591
SRR035098.445953
454 Sequencing (SRP001819)
128
202
+
Ile
GAT
[SRA]
>WENV050946
AACY022917545
Marine microbial communities from Global Ocean Sampling (GOS)
505
581
+
Ile
GAT
[ENA]
>WENV055879
AACY023242659
Marine microbial communities from Global Ocean Sampling (GOS)
389
313
-
Ile
GAT
[ENA]
>WENV058947
AACY023348210
Marine microbial communities from Global Ocean Sampling (GOS)
615
539
-
Ile
GAT
[ENA]
>W121063454
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
86016
86090
+
Ile
GAT
[ENA]
¡û
>WENV069995
AACY023792227
Marine microbial communities from Global Ocean Sampling (GOS)
991
915
-
Ile
GAT
[ENA]
>WENV070322
AACY023805243
Marine microbial communities from Global Ocean Sampling (GOS)
1182
1106
-
Ile
GAT
[ENA]
>WENV070324
AACY023805264
Marine microbial communities from Global Ocean Sampling (GOS)
1550
1474
-
Ile
GAT
[ENA]
>WENV070731
AACY023820322
Marine microbial communities from Global Ocean Sampling (GOS)
884
808
-
Ile
GAT
[ENA]
>WENV071305
AACY023842624
Marine microbial communities from Global Ocean Sampling (GOS)
207
131
-
Ile
GAT
[ENA]
>WENV074582
AACY023983967
Marine microbial communities from Global Ocean Sampling (GOS)
598
522
-
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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