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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28652 (22 seq.)
>WENV170705829
LNAP01000419
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
41586
41497
-
Ser
TGA
[ENA]
¡û
>W1910175737
BJCS01000011
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
6161
6250
+
Ser
TGA
[ENA]
¡û
>W1910913923
NHRJ02000017
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
79955
79866
-
Ser
TGA
[ENA]
¡û
>W2010089114
BJCS01000011
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
6161
6250
+
Ser
TGA
[ENA]
¡û
>W2010966944
NHRJ02000017
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
79955
79866
-
Ser
TGA
[ENA]
¡û
>W2011577157
SGWF01000023
Bacillota
Paenibacillus sp. JMULE4 [SGWF]
5841
5930
+
Ser
TGA
[ENA]
¡û
>W2011580864
SHLX01000042
Bacillota
Paenibacillus sp. R196 [SHLX]
56524
56435
-
Ser
TGA
[ENA]
¡û
>W2011599759
SIRE01000055
Bacillota
Paenibacillus sp. N2SHLJ1 [SIRE]
6486
6574
+
Ser
TGA
[ENA]
¡û
>W2110430911
JAEMXM010000031
Bacillota
Paenibacillus sp. YIM B00362 YIM B00362 [JAEMXM]
55173
55084
-
Ser
TGA
[ENA]
¡û
>C231044001
CP035456
Bacillota
Paenibacillus mucilaginosus KN-18 [CP035456]
21927
22016
+
Ser
TGA
-
¡û
>C241243006
CP121102
Bacillota
Paenibacillus larvae PL006 [CP121102]
3224775
3224864
+
Ser
TGA
-
¡û
>C241293290
CP130318
Bacillota
Paenibacillus aurantius MBLB1776 [CP130318]
22782
22871
+
Ser
TGA
-
¡û
>C11117403
CP002869
Bacillota
Paenibacillus mucilaginosus KNP414 [CP002869]
21635
21724
+
Ser
TGA
[Ensembl]
¡û
>C121009265
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
21580
21669
+
Ser
TGA
[Ensembl]
¡û
>C121012928
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
21879
21968
+
Ser
TGA
[Ensembl]
¡û
>C161058244
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
4258194
4258105
-
Ser
TGA
[Ensembl]
¡û
>W1610048446
BBEC01000074
Bacillota
Paenibacillus sp. YK5 [BBEC]
6014
6103
+
Ser
TGA
[ENA]
¡û
>W1710044956
BBEC01000074
Bacillota
Paenibacillus sp. YK5 [BBEC]
6014
6103
+
Ser
TGA
[ENA]
¡û
>W1710518338
FNDY01000017
Bacillota
Paenibacillus naphthalenovorans [FNDY]
79704
79615
-
Ser
TGA
[ENA]
¡û
>W1710547030
FOCQ01000002
Bacillota
Lihuaxuella thermophila [FOCQ]
254947
255036
+
Ser
TGA
[ENA]
¡û
>W1710565965
FORR01000001
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
455115
455204
+
Ser
TGA
[ENA]
¡û
>W1710579780
FPIU01000026
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
6460
6549
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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