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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287321 (67 seq.)
>W1711091853
LTDM01000063
Bacillota
Tissierella creatinophila DSM 6911 [LTDM]
302
377
+
Ala
TGC
[ENA]
¡û
>C171064244
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2586297
2586372
+
Ala
TGC
-
¡û
>C171064261
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2607641
2607716
+
Ala
TGC
-
¡û
>C171064272
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2614472
2614547
+
Ala
TGC
-
¡û
>C171064308
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
719998
719923
-
Ala
TGC
-
¡û
>C171064328
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
706867
706792
-
Ala
TGC
-
¡û
>C171064342
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
699756
699681
-
Ala
TGC
-
¡û
>C171109191
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1392123
1392198
+
Ala
TGC
-
¡û
>C171109208
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1413467
1413542
+
Ala
TGC
-
¡û
>C171109219
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1420298
1420373
+
Ala
TGC
-
¡û
>C171109250
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4112550
4112475
-
Ala
TGC
-
¡û
>C171109270
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4099419
4099344
-
Ala
TGC
-
¡û
>C171109284
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4092308
4092233
-
Ala
TGC
-
¡û
>W131204447
ATBZ01000022
Bacillota
Acidaminococcus sp. HPA0509 [ATBZ]
73982
73907
-
Ala
TGC
[ENA]
¡û
>C000782
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
50461
50536
+
Ala
TGC
[Ensembl]
¡û
>C000794
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1838777
1838852
+
Ala
TGC
[Ensembl]
¡û
>C000822
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4450559
4450484
-
Ala
TGC
[Ensembl]
¡û
>w017075
AAQV01000076
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
929
1006
+
Ala
TGC
[ENA]
¡û
>w016996
AAQV01000003
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
110159
110082
-
Ala
TGC
[ENA]
¡û
>w010468
AAKU01000238
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1712
1787
+
Ala
TGC
[ENA]
¡û
>WENV180096402
MTBK01127516
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
262
337
+
Ala
TGC
[ENA]
¢þ
>WENV180297742
OBJA01076313
[OBJA] soil metagenome; sediment, water from around vicinity
157
232
+
Ala
TGC
[ENA]
¢þ
>WENV180715597
ODFW01017603
[ODFW] human metagenome; G_DNA_Stool
906
831
-
Ala
TGC
[ENA]
¢þ
>WENV180820456
ODJR01007846
[ODJR] human metagenome; G_DNA_Tongue dorsum
1338
1413
+
Ala
TGC
[ENA]
¢þ
>WENV180826585
ODJZ01006232
[ODJZ] human metagenome; G_DNA_Stool
1333
1408
+
Ala
TGC
[ENA]
¢þ
>WENV180826720
ODJZ01021631
[ODJZ] human metagenome; G_DNA_Stool
135
60
-
Ala
TGC
[ENA]
¢þ
>WENV180844903
ODKP01021451
[ODKP] human metagenome; G_DNA_Anterior nares
136
61
-
Ala
TGC
[ENA]
¢þ
>WENV180867685
ODLK01008670
[ODLK] human metagenome; G_DNA_Stool
1667
1592
-
Ala
TGC
[ENA]
¢þ
>WENV180897757
ODNI01073648
[ODNI] human metagenome; G_DNA_Tongue dorsum
327
252
-
Ala
TGC
[ENA]
¢þ
>WENV180905953
ODPF01210720
[ODPF] human metagenome; G_DNA_Stool
7
82
+
Ala
TGC
[ENA]
¢þ
>WENV180965805
ODUP01009880
[ODUP] human metagenome; G_DNA_Stool
1667
1592
-
Ala
TGC
[ENA]
¢þ
>WENV181074976
OEAO01047498
[OEAO] human metagenome; G_DNA_Tongue dorsum
140
215
+
Ala
TGC
[ENA]
¢þ
>WENV181113114
OEEL01011967
[OEEL] human metagenome; G_DNA_Tongue dorsum
73
148
+
Ala
TGC
[ENA]
¢þ
>WENV181347705
OFMM01022522
[OFMM] human gut metagenome; human gut
910
835
-
Ala
TGC
[ENA]
¢þ
>WENV181427713
OGCT01000203
[OGCT] metagenome; Human gut stool
312
387
+
Ala
TGC
[ENA]
¢þ
>WENV181571793
OGJP01002124
[OGJP] metagenome; Human gut stool
2330
2255
-
Ala
TGC
[ENA]
¢þ
>WENV181626566
OGML01054292
[OGML] metagenome; Human gut stool
714
639
-
Ala
TGC
[ENA]
¢þ
>WENV181770599
OGRB01009761
[OGRB] human gut metagenome; faeces
7
82
+
Ala
TGC
[ENA]
¢þ
>WENV181841250
OGVR01002474
[OGVR] freshwater metagenome; freshwater
707
632
-
Ala
TGC
[ENA]
¢þ
>C08000721
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
64740
64815
+
Ala
TGC
[Ensembl]
¡û
>C08000733
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2615869
2615797
-
Ala
TGC
[Ensembl]
¡û
>C08000758
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2608388
2608316
-
Ala
TGC
[Ensembl]
¡û
>C08000779
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1927767
1927695
-
Ala
TGC
[Ensembl]
¡û
>WENV182439297
OIJR01001253
[OIJR] human gut metagenome; human gut
829
754
-
Ala
TGC
[ENA]
¢þ
>WENV182450308
OILV01001100
[OILV] human gut metagenome; human gut
151
226
+
Ala
TGC
[ENA]
¢þ
>WENV182492045
OISP01008577
[OISP] human gut metagenome; human gut
589
514
-
Ala
TGC
[ENA]
¢þ
>WENV182504154
OIUS01007781
[OIUS] human gut metagenome; human gut
299
374
+
Ala
TGC
[ENA]
¢þ
>WENV182997926
OLBR01000444
[OLBR] human gut metagenome; human gut
1809
1734
-
Ala
TGC
[ENA]
¢þ
>WENV183241277
OLRA01080083
[OLRA] human gut metagenome; faeces
132
207
+
Ala
TGC
[ENA]
¢þ
>WENV183324462
OLVY01013828
[OLVY] human gut metagenome; feces
2036
1961
-
Ala
TGC
[ENA]
¢þ
>WENV183372586
OLXW01037107
[OLXW] human gut metagenome; feces
555
480
-
Ala
TGC
[ENA]
¢þ
>WENV183513635
OMKS01006487
[OMKS] sediment metagenome; hot spring sediment
4260
4185
-
Ala
TGC
[ENA]
¢þ
>WENV170057732
CDZG01048836
[CDZG] gut metagenome; human stools
435
360
-
Ala
TGC
[ENA]
¢þ
>WENV170638287
JFBN01458117
[JFBN] chicken gut metagenome; ceca of Broiler chicken
407
332
-
Ala
TGC
[ENA]
¢þ
>WENV170675304
LCWZ01037417
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
26
101
+
Ala
TGC
[ENA]
¢þ
>WENV170675346
LCWZ01044237
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
367
292
-
Ala
TGC
[ENA]
¢þ
>WENV170675527
LCWZ01110762
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
26
101
+
Ala
TGC
[ENA]
¢þ
>W1810000060
BDQY01000080
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
154
229
+
Ala
TGC
[ENA]
¡û
>W1810000061
BDQY01000083
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
153
228
+
Ala
TGC
[ENA]
¡û
>W1810000062
BDQY01000084
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
186
261
+
Ala
TGC
[ENA]
¡û
>W1810233039
PPDB01000006
Bacillota
Veillonella denticariosi JCM 15641 [PPDB]
1585
1660
+
Ala
TGC
[ENA]
¡û
>C151057223
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1163224
1163299
+
Ala
TGC
[Ensembl]
¡û
>C151057240
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1174763
1174838
+
Ala
TGC
[Ensembl]
¡û
>W11141422
AENV01000005
Bacillota
Selenomonas sp. oral taxon 137 oral taxon 137 str. F0430 [AENV]
78266
78341
+
Ala
TGC
[ENA]
¡û
>C121000924
AP012292
Bacillota
Selenomonas ruminantium subsp. lactilytica TAM6421 [AP012292]
135359
135434
+
Ala
TGC
[Ensembl]
¡û
>C121000973
AP012292
Bacillota
Selenomonas ruminantium subsp. lactilytica TAM6421 [AP012292]
2675563
2675488
-
Ala
TGC
[Ensembl]
¡û
>W121001284
ACZM01000008
Bacillota
Selenomonas infelix ATCC 43532 [ACZM]
493
568
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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