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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288001 (39 seq.)
>W1711292647
LZXY01000005
Gammaproteobacteria
Glaciecola punicea [LZXY]
77571
77496
-
Gln
TTG
[ENA]
¡û
>W1711292648
LZXY01000005
Gammaproteobacteria
Glaciecola punicea [LZXY]
77456
77381
-
Gln
TTG
[ENA]
¡û
>W131176075
ARJT01000026
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
102475
102400
-
Gln
TTG
[ENA]
¡û
>W131176076
ARJT01000026
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
102360
102285
-
Gln
TTG
[ENA]
¡û
>W131176079
ARJT01000026
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
102049
101974
-
Gln
TTG
[ENA]
¡û
>W131221863
AUAV01000003
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [AUAV]
241477
241552
+
Gln
TTG
[ENA]
¡û
>C171071796
CP018031
Gammaproteobacteria
Alteromonas sp. RW2A1 [CP018031]
1598715
1598790
+
Gln
TTG
-
¡û
>C171071798
CP018031
Gammaproteobacteria
Alteromonas sp. RW2A1 [CP018031]
1598901
1598976
+
Gln
TTG
-
¡û
>WENV180049230
MPLU02044871
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
430
505
+
Gln
TTG
[ENA]
¢þ
>WENV180113536
OAPQ01148326
[OAPQ] marine metagenome; ENVO: 00002149
154
79
-
Gln
TTG
[ENA]
¢þ
>WENV180293832
OBIY01001946
[OBIY] beach sand metagenome; beach sand
4995
4920
-
Gln
TTG
[ENA]
¢þ
>WENV180396339
OBPV01000039
[OBPV] marine metagenome; ENVO:00002010
638
713
+
Gln
TTG
[ENA]
¢þ
>WENV181322787
OFKU01020100
[OFKU] marine metagenome; sea ice
226
151
-
Gln
TTG
[ENA]
¢þ
>WENV181322788
OFKU01020100
[OFKU] marine metagenome; sea ice
107
32
-
Gln
TTG
[ENA]
¢þ
>W141224103
BAET01000007
Gammaproteobacteria
Glaciecola punicea DSM 14233 = ACAM 611 [BAET]
92183
92108
-
Gln
TTG
[ENA]
¡û
>W141224104
BAET01000007
Gammaproteobacteria
Glaciecola punicea DSM 14233 = ACAM 611 [BAET]
92068
91993
-
Gln
TTG
[ENA]
¡û
>WENV182546449
OJBO01040407
[OJBO] seawater metagenome; Sea water
19
94
+
Gln
TTG
[ENA]
¢þ
>WENV182546916
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
526
601
+
Gln
TTG
[ENA]
¢þ
>WENV182566674
OJEM01000021
[OJEM] seawater metagenome; Sea water
43505
43430
-
Gln
TTG
[ENA]
¢þ
>WENV182586137
OJHJ01003496
[OJHJ] seawater metagenome; Sea water
2007
1932
-
Gln
TTG
[ENA]
¢þ
>WENV183617154
OOEE01076125
[OOEE] marine metagenome; sea ice
383
308
-
Gln
TTG
[ENA]
¢þ
>WENV183621201
OOFT01016474
[OOFT] marine metagenome; sea ice
404
479
+
Gln
TTG
[ENA]
¢þ
>WENV183622657
OOFW01000864
[OOFW] marine metagenome; sea ice
2761
2686
-
Gln
TTG
[ENA]
¢þ
>WENV183622790
OOFW01009858
[OOFW] marine metagenome; sea ice
256
181
-
Gln
TTG
[ENA]
¢þ
>WENV183624836
OOGE01017407
[OOGE] marine metagenome; sea ice
239
314
+
Gln
TTG
[ENA]
¢þ
>WENV183628801
OOGO01028338
[OOGO] marine metagenome; sea ice
232
307
+
Gln
TTG
[ENA]
¢þ
>WENV170294169
CESC01044604
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
561
486
-
Gln
TTG
[ENA]
¢þ
>C181113238
CP025115
Gammaproteobacteria
Alteromonas sp. MB-3u-76 [CP025115]
2834756
2834831
+
Gln
TTG
-
¡û
>C181113240
CP025115
Gammaproteobacteria
Alteromonas sp. MB-3u-76 [CP025115]
2834942
2835017
+
Gln
TTG
-
¡û
>W141814257
JQFW01000027
Gammaproteobacteria
Alteromonas sp. LOR [JQFW]
96796
96721
-
Gln
TTG
[ENA]
¡û
>W141814259
JQFW01000027
Gammaproteobacteria
Alteromonas sp. LOR [JQFW]
96610
96535
-
Gln
TTG
[ENA]
¡û
>W141814843
JQHG01000037
Gammaproteobacteria
Alteromonas sp. LTR [JQHG]
98921
98846
-
Gln
TTG
[ENA]
¡û
>W141814844
JQHG01000037
Gammaproteobacteria
Alteromonas sp. LTR [JQHG]
98733
98658
-
Gln
TTG
[ENA]
¡û
>W1910001334
AQOQ01000009
Gammaproteobacteria
Alcanivorax sp. MD8A [AQOQ]
90967
91042
+
Gln
TTG
[ENA]
¡û
>W1911809145
QYYA01000004
Gammaproteobacteria
Alcanivorax profundi MTEO17 [QYYA]
235427
235502
+
Gln
TTG
[ENA]
¡û
>W1810155438
PJAR01000044
Gammaproteobacteria
Glaciecola sp. 33A [PJAR]
292971
292896
-
Gln
TTG
[ENA]
¡û
>C121004904
CP003060
Gammaproteobacteria
Glaciecola nitratireducens FR1064 [CP003060]
2380119
2380194
+
Gln
TTG
[Ensembl]
¡û
>C121004907
CP003060
Gammaproteobacteria
Glaciecola nitratireducens FR1064 [CP003060]
2386247
2386322
+
Gln
TTG
[Ensembl]
¡û
>C121004908
CP003060
Gammaproteobacteria
Glaciecola nitratireducens FR1064 [CP003060]
2386381
2386456
+
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK