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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28870 (43 seq.)
>W131169830
ARFA01000036
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
81685
81774
+
Ser
GGA
[ENA]
¡û
>W131169908
ARFC01000020
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
4159
4072
-
Ser
GGA
[ENA]
¡û
>W131169929
ARFD01000019
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
44692
44781
+
Ser
GGA
[ENA]
¡û
>W1711504018
MKUD01000072
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
229163
229076
-
Ser
GGA
[ENA]
¡û
>W1711606584
MORL01000006
Bacteroidota
Arsenicibacter rosenii [MORL]
195297
195386
+
Ser
GGA
[ENA]
¡û
>W1711769446
MVEC01000002
Bacteroidota
Spirosoma sp. 209 [MVEC]
33760
33671
-
Ser
GGA
[ENA]
¡û
>C171030753
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
1581369
1581280
-
Ser
GGA
-
¡û
>C171104406
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
4027183
4027096
-
Ser
GGA
-
¡û
>C171104448
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
4025996
4025909
-
Ser
GGA
-
¡û
>C181113127
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
7981202
7981289
+
Ser
GGA
-
¡û
>C181193415
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
2144554
2144641
+
Ser
GGA
-
¡û
>W143004253
AZQN01000004
Bacteroidota
Dyadobacter tibetensis Y620-1 [AZQN]
267461
267372
-
Ser
GGA
[ENA]
¡û
>W1911497269
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2141588
2141501
-
Ser
GGA
[ENA]
¡û
>W1810595306
QGDT01000018
Bacteroidota
Dyadobacter jejuensis DSM 100346 [QGDT]
2172
2085
-
Ser
GGA
[ENA]
¡û
>W1810692108
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
1269493
1269406
-
Ser
GGA
[ENA]
¡û
>W1810758685
QPIW01000004
Bacteroidota
Runella aurantiaca YX9 [QPIW]
71513
71422
-
Ser
GGA
[ENA]
¡û
>SRA1015936
SRR023846.270487
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
198
109
-
Ser
GGA
[SRA]
>C151068633
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
3097459
3097372
-
Ser
GGA
[Ensembl]
¡û
>W2010435347
JAAAKZ010000016
Bacteroidota
Runella sp. CRIBMP [JAAAKZ]
45269
45356
+
Ser
GGA
[ENA]
¡û
>W2010468898
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
3272354
3272267
-
Ser
GGA
[ENA]
¡û
>W2011158173
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2141588
2141501
-
Ser
GGA
[ENA]
¡û
>W2011532758
SBLB01000003
Bacteroidota
Spirosoma sp. TY50 [SBLB]
466591
466503
-
Ser
GGA
[ENA]
¡û
>W2011705629
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
2281078
2281165
+
Ser
GGA
[ENA]
¡û
>W2011753387
SZVO01000029
Bacteroidota
Dyadobacter sp. AR-3-8 [SZVO]
7973
8060
+
Ser
GGA
[ENA]
¡û
>W2012141118
VTOL01000002
Bacteroidota
Dyadobacter sp. 3J3 [VTOL]
582514
582601
+
Ser
GGA
[ENA]
¡û
>W2012412170
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
1269493
1269406
-
Ser
GGA
[ENA]
¡û
>W2012412203
WPIN01000021
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
91710
91623
-
Ser
GGA
[ENA]
¡û
>W2110283034
JACXAA010000007
Bacteroidota
Spirosoma validum BT704 [JACXAA]
185914
185827
-
Ser
GGA
[ENA]
¡û
>W2110287460
JACYGY010000001
Bacteroidota
Dyadobacter subterraneus UP-52 [JACYGY]
3783202
3783289
+
Ser
GGA
[ENA]
¡û
>C211124439
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
2659133
2659220
+
Ser
GGA
-
¡û
>C231263215
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
4242940
4242853
-
Ser
GGA
-
¡û
>W2110772295
VFIA01000030
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
58727
58640
-
Ser
GGA
[ENA]
¡û
>W2110772321
VFIC01000010
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
56909
56996
+
Ser
GGA
[ENA]
¡û
>W2110776296
VOSI01000002
Bacteroidota
Edaphocola aurantiacus H2 [VOSI]
82705
82792
+
Ser
GGA
[ENA]
¡û
>C241057067
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
4086528
4086615
+
Ser
GGA
-
¡û
>C241140675
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
4689436
4689523
+
Ser
GGA
-
¡û
>C241156324
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
2975081
2974993
-
Ser
GGA
-
¡û
>C241171838
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
4467120
4467207
+
Ser
GGA
-
¡û
>W2310027229
BSQH01000038
Bacteroidota
Dyadobacter frigoris NBRC 113792 [BSQH]
7796
7883
+
Ser
GGA
[ENA]
¡û
>C10111797
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
2703840
2703753
-
Ser
GGA
[Ensembl]
¡û
>C11118898
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
3857367
3857276
-
Ser
GGA
[Ensembl]
¡û
>W1710540995
FNXY01000006
Bacteroidota
Dyadobacter koreensis [FNXY]
204404
204315
-
Ser
GGA
[ENA]
¡û
>W1710558211
FOLQ01000019
Bacteroidota
Spirosoma endophyticum [FOLQ]
62359
62446
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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