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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288993 (26 seq.)
>W131221728
AUAR01000014
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
57006
57081
+
Ala
GGC
[ENA]
¡û
>W131221742
AUAR01000024
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
19792
19867
+
Ala
GGC
[ENA]
¡û
>C009999
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
1518981
1519056
+
Ala
GGC
[Ensembl]
¡û
>C010103
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1603508
1603583
+
Ala
GGC
[Ensembl]
¡û
>WENV180042541
LQAF01002983
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1249
1174
-
Ala
GGC
[ENA]
¢þ
>WENV180315409
OBKH01085401
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
140
215
+
Ala
GGC
[ENA]
¢þ
>WENV181286618
OFGW01011724
[OFGW] soil metagenome; Clay
313
388
+
Ala
GGC
[ENA]
¢þ
>WENV183715254
PDWI01229798
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
386
311
-
Ala
GGC
[ENA]
¢þ
>WENV183718065
PDWJ01002296
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
23310
23235
-
Ala
GGC
[ENA]
¢þ
>WENV183719305
PDWJ01012105
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
7013
7088
+
Ala
GGC
[ENA]
¢þ
>WENV183721534
PDWJ01073991
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1522
1447
-
Ala
GGC
[ENA]
¢þ
>WENV170658046
JTFP01048941
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
55
130
+
Ala
GGC
[ENA]
¢þ
>WENV170686613
LFRM01154799
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
701
626
-
Ala
GGC
[ENA]
¢þ
>WENV170689807
LFRM01312238
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
622
547
-
Ala
GGC
[ENA]
¢þ
>C191000612
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1560428
1560503
+
Ala
GGC
-
¡û
>W09100209
AAAS03000002
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
586880
586805
-
Ala
GGC
[ENA]
¡û
>W1510006431
BAZF01000006
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
82225
82300
+
Ala
GGC
[ENA]
¡û
>C10107445
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1573158
1573233
+
Ala
GGC
[Ensembl]
¡û
>W1511501015
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1779665
1779590
-
Ala
GGC
[ENA]
¡û
>C161025458
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
4342540
4342465
-
Ala
GGC
[Ensembl]
¡û
>C161069056
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
1012665
1012590
-
Ala
GGC
[Ensembl]
¡û
>C161080260
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
2118864
2118789
-
Ala
GGC
-
¡û
>W121010731
AGJM01000015
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
47919
47844
-
Ala
GGC
[ENA]
¡û
>W1610082340
BDFE01000015
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
170365
170440
+
Ala
GGC
[ENA]
¡û
>W1710081340
BDFE01000015
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
170365
170440
+
Ala
GGC
[ENA]
¡û
>W1710087189
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
1233006
1232931
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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