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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28902 (43 seq.)
>C025524
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
2402369
2402455
+
Ser
CGA
[Ensembl]
¡û
>WENV180012957
FMSI01034564
[FMSI] soil metagenome; Soil
1204
1116
-
Ser
CGA
[ENA]
¡û
>WENV181414161
OGCL01000063
[OGCL] hot springs metagenome; Hot spring water
64438
64347
-
Ser
CGA
[ENA]
¡û
>WENV170000916
AFSR01007791
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
2306
2218
-
Ser
CGA
[ENA]
¡û
>C181030490
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
927960
927872
-
Ser
CGA
-
¡û
>C191001211
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
2271377
2271466
+
Ser
CGA
-
¡û
>C141007936
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1706368
1706456
+
Ser
CGA
-
¡û
>W2110229895
JACJQO010000005
Cyanobacteriota
Pseudanabaena sp. FACHB-2040 [JACJQO]
1172622
1172710
+
Ser
CGA
[ENA]
¡û
>W2110284820
JACXWX010000003
Cyanobacteriota
Phormidium tenue FACHB-886 [JACXWX]
19927
20016
+
Ser
CGA
[ENA]
¡û
>C201088929
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
983517
983605
+
Ser
CGA
-
¡û
>C211275137
CP070366
Cyanobacteriota
Thermoleptolyngbya sp. PKUAC-SCTB121 [CP070366]
5144246
5144158
-
Ser
CGA
-
¡û
>C211280903
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
1839600
1839688
+
Ser
CGA
-
¡û
>C231248764
CP088016
Cyanobacteriota
Gloeomargaritales cyanobacterium VI4D9 [CP088016]
516114
516026
-
Ser
CGA
-
¡û
>C231396166
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
1500392
1500480
+
Ser
CGA
-
¡û
>C231653690
OV696605
Cyanobacteriota
Gloeomargaritales cyanobacterium VI4D9 [OV696605]
516114
516026
-
Ser
CGA
-
¡û
>C241157840
CP053661
Cyanobacteriota
Thermoleptolyngbya sichuanensis A183 [CP053661]
1704530
1704618
+
Ser
CGA
-
¡û
>C241188869
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
998521
998609
+
Ser
CGA
-
¡û
>C241190847
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
993908
993996
+
Ser
CGA
-
¡û
>C241192263
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
1000012
1000100
+
Ser
CGA
-
¡û
>C241293652
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
1860913
1861001
+
Ser
CGA
-
¡û
>C241293684
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
991486
991574
+
Ser
CGA
-
¡û
>C241293740
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
1419042
1418954
-
Ser
CGA
-
¡û
>C241316040
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
1833475
1833563
+
Ser
CGA
-
¡û
>C241316078
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
1861680
1861768
+
Ser
CGA
-
¡û
>C241316116
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
1861830
1861918
+
Ser
CGA
-
¡û
>C241316154
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
1833276
1833363
+
Ser
CGA
-
¡û
>C241316192
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
1831796
1831884
+
Ser
CGA
-
¡û
>C241316230
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
1831820
1831908
+
Ser
CGA
-
¡û
>C241316268
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
1830177
1830265
+
Ser
CGA
-
¡û
>C241316306
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
1830180
1830268
+
Ser
CGA
-
¡û
>C241316344
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
1830099
1830187
+
Ser
CGA
-
¡û
>C241316382
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
1849677
1849765
+
Ser
CGA
-
¡û
>C241316420
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
1849747
1849835
+
Ser
CGA
-
¡û
>C241316458
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
1849954
1850042
+
Ser
CGA
-
¡û
>C241316496
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
1852687
1852775
+
Ser
CGA
-
¡û
>C241316534
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
1852687
1852775
+
Ser
CGA
-
¡û
>C241316584
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
1419043
1418955
-
Ser
CGA
-
¡û
>C241316610
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
1829231
1829318
+
Ser
CGA
-
¡û
>C241316642
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
991486
991574
+
Ser
CGA
-
¡û
>C241316680
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
991486
991574
+
Ser
CGA
-
¡û
>C241316782
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
996214
996302
+
Ser
CGA
-
¡û
>WENV11101259
AFSR01007791
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
2306
2218
-
Ser
CGA
[ENA]
¡û
>C161002801
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
1534098
1534010
-
Ser
CGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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