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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289143 (121 seq.)
>W1710891768
LNDA01000046
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
222540
222465
-
Thr
CGT
[ENA]
¡û
>W1710935832
LOKT01000009
Actinomycetota
Nocardia donostiensis [LOKT]
209102
209177
+
Thr
CGT
[ENA]
¡û
>W1711050376
LRRM01000002
Actinomycetota
Nocardia brasiliensis [LRRM]
458551
458626
+
Thr
CGT
[ENA]
¡û
>W1711080909
LSRJ01000022
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
61695
61620
-
Thr
CGT
[ENA]
¡û
>W1711281724
LZMK01000193
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
7575
7650
+
Thr
CGT
[ENA]
¡û
>W1711281790
LZML01000189
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
125380
125305
-
Thr
CGT
[ENA]
¡û
>W1711285850
LZSP01000091
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
7262
7187
-
Thr
CGT
[ENA]
¡û
>W131221639
AUAQ01000011
Actinomycetota
Corynebacterium freiburgense DSM 45254 [AUAQ]
268096
268171
+
Thr
CGT
[ENA]
¡û
>W1711613642
MOYO01000001
Actinomycetota
Nocardia seriolae [MOYO]
8149273
8149348
+
Thr
CGT
[ENA]
¡û
>W1711739083
MUBO01000155
Actinomycetota
Streptomyces daghestanicus [MUBO]
8679
8754
+
Thr
CGT
[ENA]
¡û
>W1711750419
MUMY01000015
Actinomycetota
Nocardia donostiensis [MUMY]
68829
68754
-
Thr
CGT
[ENA]
¡û
>C171068265
CP017839
Actinomycetota
Nocardia seriolae EM150506 [CP017839]
355933
355858
-
Thr
CGT
-
¡û
>W131162068
AQYG01000050
Actinomycetota
Jongsikchunia kroppenstedtii DSM 45133 [AQYG]
30869
30796
-
Thr
CGT
[ENA]
¡û
>C014816
AP006618
Actinomycetota
Nocardia farcinica IFM 10152 [AP006618]
384086
384161
+
Thr
CGT
[Ensembl]
¡û
>WENV180031869
FTJU01000178
[FTJU] metagenome; soil
34718
34793
+
Thr
CGT
[ENA]
¢þ
>WENV180031910
FTJU01001082
[FTJU] metagenome; soil
28743
28668
-
Thr
CGT
[ENA]
¢þ
>WENV180032001
FTJU01004837
[FTJU] metagenome; soil
636
711
+
Thr
CGT
[ENA]
¢þ
>WENV180094974
MTBK01041777
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
168370
168296
-
Thr
CGT
[ENA]
¢þ
>W141168718
AXVD01000022
Actinomycetota
Nocardia sp. CNY236 [AXVD]
113292
113367
+
Thr
CGT
[ENA]
¡û
>W141231351
BATZ01000013
Actinomycetota
Nocardia otitidiscaviarum IFM 11049 [BATZ]
22804
22879
+
Thr
CGT
[ENA]
¡û
>W141231420
BAUA01000073
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
29884
29809
-
Thr
CGT
[ENA]
¡û
>W141233824
BAWD01000072
Actinomycetota
Nocardia seriolae N-2927 [BAWD]
2671
2596
-
Thr
CGT
[ENA]
¡û
>W141278610
JAFQ01000004
Actinomycetota
Nocardia sp. BMG51109 [JAFQ]
1737152
1737077
-
Thr
CGT
[ENA]
¡û
>W09110275
ABVA01000001
Actinomycetota
Tsukamurella paurometabola DSM 20162 [ABVA]
679814
679739
-
Thr
CGT
[ENA]
¡û
>C181200314
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
3348707
3348632
-
Thr
CGT
-
¡û
>C191208358
LR134352
Actinomycetota
Nocardia asteroides NCTC11293 [LR134352]
1155882
1155956
+
Thr
CGT
-
¡û
>W141759271
JNZF01000004
Actinomycetota
Nocardia carnea carneus [JNZF]
355095
355170
+
Thr
CGT
[ENA]
¡û
>W141760939
JOAJ01000009
Actinomycetota
Nocardia rhamnosiphila [JOAJ]
89377
89302
-
Thr
CGT
[ENA]
¡û
>W141767059
JOEJ01000009
Actinomycetota
Nocardia rhamnosiphila [JOEJ]
89082
89007
-
Thr
CGT
[ENA]
¡û
>W141769097
JOFP01000013
Actinomycetota
Pilimelia anulata [JOFP]
23845
23920
+
Thr
CGT
[ENA]
¡û
>W1910433916
FVWC01001661
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 537 [FVWC]
334
259
-
Thr
CGT
[ENA]
¡û
>W1911422490
NXEH01000017
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
91003
90928
-
Thr
CGT
[ENA]
¡û
>W1911814628
QZFU01000014
Actinomycetota
Nocardia panacis YIM PH 21724 [QZFU]
50370
50295
-
Thr
CGT
[ENA]
¡û
>SRA1001762
SRR001308.40420
Metagenomic characterization of a wastewater treatment plant (SRP000180)
99
26
-
Thr
CGT
[SRA]
>W1810282358
PSYZ01000010
Actinomycetota
Nocardia nova ATCC 10905 [PSYZ]
283463
283388
-
Thr
CGT
[ENA]
¡û
>W1810282461
PSZB01000010
Actinomycetota
Nocardia nova MDA3397 [PSZB]
181376
181451
+
Thr
CGT
[ENA]
¡û
>W1810282555
PSZD01000010
Actinomycetota
Nocardia nova BAA2227 [PSZD]
13535
13610
+
Thr
CGT
[ENA]
¡û
>W1810390977
PXZE01000031
Actinomycetota
Nocardia seriolae HSY-NS01 [PXZE]
2772
2699
-
Thr
CGT
[ENA]
¡û
>W1810402944
PYHT01000003
Actinomycetota
Nocardia sp. MDA0666 [PYHT]
13546
13621
+
Thr
CGT
[ENA]
¡û
>W1810659644
QJKF01000006
Actinomycetota
Nocardia tenerifensis DSM 44704 [QJKF]
416230
416305
+
Thr
CGT
[ENA]
¡û
>W1810763321
QQAZ01000009
Actinomycetota
Nocardia mexicana DSM 44952 [QQAZ]
88275
88350
+
Thr
CGT
[ENA]
¡û
>W1810763464
QQBC01000005
Actinomycetota
Nocardia pseudobrasiliensis DSM 44290 [QQBC]
346024
346099
+
Thr
CGT
[ENA]
¡û
>C151013325
CP006850
Actinomycetota
Nocardia nova SH22a [CP006850]
448987
449062
+
Thr
CGT
[Ensembl]
¡û
>C151084379
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
227163
227238
+
Thr
CGT
[Ensembl]
¡û
>W1510021304
BBYQ01000092
Actinomycetota
Nocardia seriolae U-1 [BBYQ]
2664
2589
-
Thr
CGT
[ENA]
¡û
>C11101246
CP002786
Actinomycetota
Hoyosella subflava DQS3-9A1 [CP002786]
312150
312223
+
Thr
CGT
[Ensembl]
¡û
>W121123625
BAED01000002
Actinomycetota
Gordonia amarae NBRC 15530 [BAED]
37971
38046
+
Thr
CGT
[ENA]
¡û
>W121125164
BAFV01000004
Actinomycetota
Nocardia carnea NBRC 14403 [BAFV]
15553
15628
+
Thr
CGT
[ENA]
¡û
>W121125897
BAGJ01000011
Actinomycetota
Nocardia testacea NBRC 100365 [BAGJ]
13405
13480
+
Thr
CGT
[ENA]
¡û
>W121126003
BAGL01000004
Actinomycetota
Nocardia transvalensis NBRC 15921 [BAGL]
188900
188975
+
Thr
CGT
[ENA]
¡û
>W121124819
BAFO01000001
Actinomycetota
Nocardia asteroides NBRC 15531 [BAFO]
352299
352374
+
Thr
CGT
[ENA]
¡û
>W121124920
BAFQ01000011
Actinomycetota
Nocardia aobensis NBRC 100429 [BAFQ]
45904
45979
+
Thr
CGT
[ENA]
¡û
>W121125062
BAFT01000003
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
296743
296818
+
Thr
CGT
[ENA]
¡û
>W121125113
BAFU01000006
Actinomycetota
Nocardia brevicatena NBRC 12119 [BAFU]
53807
53882
+
Thr
CGT
[ENA]
¡û
>W121125210
BAFW01000007
Actinomycetota
Nocardia cerradoensis NBRC 101014 [BAFW]
10134
10209
+
Thr
CGT
[ENA]
¡û
>W121125261
BAFX01000007
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
25914
25989
+
Thr
CGT
[ENA]
¡û
>W121125516
BAGC01000003
Actinomycetota
Nocardia niigatensis NBRC 100131 [BAGC]
130302
130377
+
Thr
CGT
[ENA]
¡û
>W121125741
BAGG01000008
Actinomycetota
Nocardia takedensis NBRC 100417 [BAGG]
22431
22506
+
Thr
CGT
[ENA]
¡û
>W1610057429
BBXO01000027
Actinomycetota
Nocardia pseudobrasiliensis [BBXO]
102351
102426
+
Thr
CGT
[ENA]
¡û
>W1610078315
BDAU01000036
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
2541
2616
+
Thr
CGT
[ENA]
¡û
>W1610078339
BDAV01000003
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
137637
137562
-
Thr
CGT
[ENA]
¡û
>W1610078434
BDAW01000068
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
36386
36311
-
Thr
CGT
[ENA]
¡û
>W1610078550
BDAZ01000001
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
305
230
-
Thr
CGT
[ENA]
¡û
>W1610078615
BDBA01000052
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
18583
18658
+
Thr
CGT
[ENA]
¡û
>W1610078746
BDBC01000082
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
2239
2164
-
Thr
CGT
[ENA]
¡û
>W1610078766
BDBD01000016
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
26470
26545
+
Thr
CGT
[ENA]
¡û
>W1610078965
BDBH01000002
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
121865
121790
-
Thr
CGT
[ENA]
¡û
>W1610079248
BDBM01000034
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
1306
1381
+
Thr
CGT
[ENA]
¡û
>W1610079321
BDBO01000031
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
36744
36669
-
Thr
CGT
[ENA]
¡û
>W1610079525
BDBS01000015
Actinomycetota
Nocardia pseudobrasiliensis NBRC 108224 [BDBS]
117252
117177
-
Thr
CGT
[ENA]
¡û
>W1610079698
BDBV01000051
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
622
697
+
Thr
CGT
[ENA]
¡û
>W1610079789
BDBX01000012
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
25378
25303
-
Thr
CGT
[ENA]
¡û
>W1610079884
BDBY01000400
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
21552
21477
-
Thr
CGT
[ENA]
¡û
>W1610079956
BDCA01000004
Actinomycetota
Nocardia vermiculata NBRC 100427 [BDCA]
125869
125944
+
Thr
CGT
[ENA]
¡û
>W1610080086
BDCC01000079
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
51293
51368
+
Thr
CGT
[ENA]
¡û
>W1610080124
BDCD01000022
Actinomycetota
Nocardia yamanashiensis NBRC 100130 [BDCD]
101152
101227
+
Thr
CGT
[ENA]
¡û
>W1610080164
BDCE01000010
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
83512
83587
+
Thr
CGT
[ENA]
¡û
>W1610080279
BDCG01000004
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
335281
335356
+
Thr
CGT
[ENA]
¡û
>W1610080396
BDCI01000008
Actinomycetota
Nocardia vulneris [BDCI]
396005
396080
+
Thr
CGT
[ENA]
¡û
>W1610080442
BDCJ01000005
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
119340
119415
+
Thr
CGT
[ENA]
¡û
>W1610080555
BDCL01000028
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
32431
32506
+
Thr
CGT
[ENA]
¡û
>W1610080591
BDCM01000003
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
501663
501588
-
Thr
CGT
[ENA]
¡û
>W1610080876
BDCU01000007
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
40612
40537
-
Thr
CGT
[ENA]
¡û
>W1610081251
BDDI01000013
Actinomycetota
Hoyosella altamirensis [BDDI]
43652
43579
-
Thr
CGT
[ENA]
¡û
>W121125322
BAFY01000027
Actinomycetota
Nocardia cyriacigeorgica NBRC 100375 [BAFY]
4664
4739
+
Thr
CGT
[ENA]
¡û
>W121125945
BAGK01000019
Actinomycetota
Nocardia thailandica NBRC 100428 [BAGK]
7949
8024
+
Thr
CGT
[ENA]
¡û
>C131008835
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
446348
446423
+
Thr
CGT
[Ensembl]
¡û
>W1610617966
LGYZ01000133
Actinomycetota
Nocardia arizonensis [LGYZ]
126570
126495
-
Thr
CGT
[ENA]
¡û
>W1610752133
LNDA01000046
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
222540
222465
-
Thr
CGT
[ENA]
¡û
>W1610891505
LRRM01000002
Actinomycetota
Nocardia brasiliensis [LRRM]
458551
458626
+
Thr
CGT
[ENA]
¡û
>W1610919776
LSRJ01000022
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
61695
61620
-
Thr
CGT
[ENA]
¡û
>W1611041009
LZMK01000193
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
7575
7650
+
Thr
CGT
[ENA]
¡û
>W1611041075
LZML01000189
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
125380
125305
-
Thr
CGT
[ENA]
¡û
>W1611043411
LZSP01000091
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
7262
7187
-
Thr
CGT
[ENA]
¡û
>W1710054128
BBXO01000027
Actinomycetota
Nocardia pseudobrasiliensis [BBXO]
102351
102426
+
Thr
CGT
[ENA]
¡û
>W1710076874
BDAU01000036
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
2541
2616
+
Thr
CGT
[ENA]
¡û
>W1710076898
BDAV01000003
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
137637
137562
-
Thr
CGT
[ENA]
¡û
>W1710076993
BDAW01000068
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
36386
36311
-
Thr
CGT
[ENA]
¡û
>W1710077109
BDAZ01000001
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
305
230
-
Thr
CGT
[ENA]
¡û
>W1710077174
BDBA01000052
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
18583
18658
+
Thr
CGT
[ENA]
¡û
>W1710077305
BDBC01000082
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
2239
2164
-
Thr
CGT
[ENA]
¡û
>W1710077325
BDBD01000016
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
26470
26545
+
Thr
CGT
[ENA]
¡û
>W1710077524
BDBH01000002
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
121865
121790
-
Thr
CGT
[ENA]
¡û
>W1710077807
BDBM01000034
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
1306
1381
+
Thr
CGT
[ENA]
¡û
>W1710077880
BDBO01000031
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
36744
36669
-
Thr
CGT
[ENA]
¡û
>W1710078084
BDBS01000015
Actinomycetota
Nocardia pseudobrasiliensis NBRC 108224 [BDBS]
117252
117177
-
Thr
CGT
[ENA]
¡û
>W1710078257
BDBV01000051
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
622
697
+
Thr
CGT
[ENA]
¡û
>W1710078348
BDBX01000012
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
25378
25303
-
Thr
CGT
[ENA]
¡û
>W1710078443
BDBY01000400
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
21552
21477
-
Thr
CGT
[ENA]
¡û
>W1710078515
BDCA01000004
Actinomycetota
Nocardia vermiculata NBRC 100427 [BDCA]
125869
125944
+
Thr
CGT
[ENA]
¡û
>W1710078645
BDCC01000079
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
51293
51368
+
Thr
CGT
[ENA]
¡û
>W1710078683
BDCD01000022
Actinomycetota
Nocardia yamanashiensis NBRC 100130 [BDCD]
101152
101227
+
Thr
CGT
[ENA]
¡û
>W1710078723
BDCE01000010
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
83512
83587
+
Thr
CGT
[ENA]
¡û
>W1710078838
BDCG01000004
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
335281
335356
+
Thr
CGT
[ENA]
¡û
>W1710078955
BDCI01000008
Actinomycetota
Nocardia vulneris [BDCI]
396005
396080
+
Thr
CGT
[ENA]
¡û
>W1710079001
BDCJ01000005
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
119340
119415
+
Thr
CGT
[ENA]
¡û
>W1710079114
BDCL01000028
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
32431
32506
+
Thr
CGT
[ENA]
¡û
>W1710079150
BDCM01000003
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
501663
501588
-
Thr
CGT
[ENA]
¡û
>W1710079435
BDCU01000007
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
40612
40537
-
Thr
CGT
[ENA]
¡û
>W1710079902
BDDI01000013
Actinomycetota
Hoyosella altamirensis [BDDI]
43652
43579
-
Thr
CGT
[ENA]
¡û
>W1710534691
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
4677808
4677883
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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