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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289679 (53 seq.)
>W1710836222
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1149591
1149515
-
Arg
TCG
[ENA]
¡û
>W1711055291
LRUQ01000076
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
22810
22734
-
Arg
TCG
[ENA]
¡û
>W1711055334
LRUR01000065
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
21512
21588
+
Arg
TCG
[ENA]
¡û
>W1711055348
LRUS01000069
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
8868
8792
-
Arg
TCG
[ENA]
¡û
>W1711055394
LRUT01000087
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
19871
19947
+
Arg
TCG
[ENA]
¡û
>W1711055405
LRUU01000060
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
7540
7464
-
Arg
TCG
[ENA]
¡û
>W1711055449
LRUV01000057
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
21077
21153
+
Arg
TCG
[ENA]
¡û
>W1711055478
LRUW01000050
Campylobacterota
Aliarcobacter skirrowii [LRUW]
107095
107019
-
Arg
TCG
[ENA]
¡û
>W1711055508
LRUX01000035
Campylobacterota
Aliarcobacter skirrowii [LRUX]
58217
58141
-
Arg
TCG
[ENA]
¡û
>W1711055540
LRUY01000082
Campylobacterota
Aliarcobacter skirrowii [LRUY]
68247
68323
+
Arg
TCG
[ENA]
¡û
>W1711055561
LRUZ01000033
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
77162
77238
+
Arg
TCG
[ENA]
¡û
>WENV180283633
OBID01001174
[OBID] metagenome; sludge
961
885
-
Arg
TCG
[ENA]
¢þ
>WENV181732269
OGQD01021213
[OGQD] human gut metagenome; faeces
640
564
-
Arg
TCG
[ENA]
¢þ
>W141289851
JARS01000001
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
108691
108767
+
Arg
TCG
[ENA]
¡û
>W141289905
JART01000001
Campylobacterota
Arcobacter sp. AF1028 [JART]
108704
108780
+
Arg
TCG
[ENA]
¡û
>W141290009
JARV01000001
Campylobacterota
Aliarcobacter lanthieri AF1581 [JARV]
194780
194856
+
Arg
TCG
[ENA]
¡û
>WENV170554730
CXWK01087537
[CXWK] wastewater metagenome; activated sludge
184
108
-
Arg
TCG
[ENA]
¢þ
>WENV170690978
LFRM01374146
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6703
6779
+
Arg
TCG
[ENA]
¢þ
>WENV170717936
LSQX01055167
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11670
11746
+
Arg
TCG
[ENA]
¢þ
>C191084523
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
63465
63541
+
Arg
TCG
-
¡û
>C191095052
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1914951
1914875
-
Arg
TCG
-
¡û
>C191095098
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1961514
1961438
-
Arg
TCG
-
¡û
>C191122804
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
57868
57944
+
Arg
TCG
-
¡û
>C191147089
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1211981
1212057
+
Arg
TCG
-
¡û
>W1911424342
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
94592
94516
-
Arg
TCG
[ENA]
¡û
>W1911424395
NXGD01000011
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
77704
77780
+
Arg
TCG
[ENA]
¡û
>W1911424552
NXGH01000007
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
16378
16454
+
Arg
TCG
[ENA]
¡û
>W1911424572
NXGI01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
110357
110433
+
Arg
TCG
[ENA]
¡û
>W1911424676
NXGK01000020
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
5939
5863
-
Arg
TCG
[ENA]
¡û
>W1911426129
NXIC01000001
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
631306
631230
-
Arg
TCG
[ENA]
¡û
>W1911576063
PDJS01000004
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
146337
146413
+
Arg
TCG
[ENA]
¡û
>W1911576108
PDJT01000024
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
52180
52104
-
Arg
TCG
[ENA]
¡û
>W1911576451
PDKB01000011
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
80676
80752
+
Arg
TCG
[ENA]
¡û
>W1911576696
PDKH01000001
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
612424
612348
-
Arg
TCG
[ENA]
¡û
>W1911576735
PDKI01000001
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
68846
68922
+
Arg
TCG
[ENA]
¡û
>W1810584168
QEYI01000001
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
481719
481643
-
Arg
TCG
[ENA]
¡û
>W1610585011
LCUJ01000006
Campylobacterota
Aliarcobacter thereius [LCUJ]
2774
2698
-
Arg
TCG
[ENA]
¡û
>W1610585053
LCUK01000005
Campylobacterota
Aliarcobacter thereius [LCUK]
34506
34582
+
Arg
TCG
[ENA]
¡û
>W1610586425
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
103778
103854
+
Arg
TCG
[ENA]
¡û
>W1610699361
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1149591
1149515
-
Arg
TCG
[ENA]
¡û
>W1610896337
LRUQ01000076
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
22810
22734
-
Arg
TCG
[ENA]
¡û
>W1610896380
LRUR01000065
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
21512
21588
+
Arg
TCG
[ENA]
¡û
>W1610896394
LRUS01000069
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
8868
8792
-
Arg
TCG
[ENA]
¡û
>W1610896440
LRUT01000087
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
19871
19947
+
Arg
TCG
[ENA]
¡û
>W1610896451
LRUU01000060
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
7540
7464
-
Arg
TCG
[ENA]
¡û
>W1610896495
LRUV01000057
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
21077
21153
+
Arg
TCG
[ENA]
¡û
>W1610896524
LRUW01000050
Campylobacterota
Aliarcobacter skirrowii [LRUW]
107095
107019
-
Arg
TCG
[ENA]
¡û
>W1610896554
LRUX01000035
Campylobacterota
Aliarcobacter skirrowii [LRUX]
58217
58141
-
Arg
TCG
[ENA]
¡û
>W1610896586
LRUY01000082
Campylobacterota
Aliarcobacter skirrowii [LRUY]
68247
68323
+
Arg
TCG
[ENA]
¡û
>W1610896607
LRUZ01000033
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
77162
77238
+
Arg
TCG
[ENA]
¡û
>W1710704202
LCUJ01000006
Campylobacterota
Aliarcobacter thereius [LCUJ]
2774
2698
-
Arg
TCG
[ENA]
¡û
>W1710704244
LCUK01000005
Campylobacterota
Aliarcobacter thereius [LCUK]
34506
34582
+
Arg
TCG
[ENA]
¡û
>W1710705555
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
103778
103854
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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