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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28968 (108 seq.)
>W1711092084
LTDS01000015
Bacillota
Streptococcus equi subsp. equi [LTDS]
69692
69778
+
Ser
GGA
[ENA]
¡û
>W1711104339
LTPP01000012
Bacillota
Streptococcus sp. HMSC064D12 [LTPP]
16156
16070
-
Ser
GGA
[ENA]
¡û
>W1711113181
LTYB01000050
Bacillota
Streptococcus sp. HMSC064H09 [LTYB]
62851
62937
+
Ser
GGA
[ENA]
¡û
>W1711167728
LVWW01000006
Bacillota
Streptococcus thermophilus [LVWW]
61936
62022
+
Ser
GGA
[ENA]
¡û
>W1711230130
LXZX01000005
Bacillota
Streptococcus vestibularis [LXZX]
1083530
1083616
+
Ser
GGA
[ENA]
¡û
>W1711944889
NBFD01000002
Bacillota
Streptococcus mutans [NBFD]
137971
137885
-
Ser
GGA
[ENA]
¡û
>W1711945087
NBFJ01000003
Bacillota
Streptococcus mutans [NBFJ]
89398
89484
+
Ser
GGA
[ENA]
¡û
>C171037347
CP015282
Bacillota
Streptococcus salivarius ATCC 27945 [CP015282]
1903102
1903188
+
Ser
GGA
-
¡û
>C171049552
CP016439
Bacillota
Streptococcus thermophilus CS8 [CP016439]
1275225
1275311
+
Ser
GGA
-
¡û
>W131087021
AOCC01000008
Bacillota
Streptococcus mutans NCTC 11060 [AOCC]
28480
28566
+
Ser
GGA
[ENA]
¡û
>W131087040
AOCD01000006
Bacillota
Streptococcus ratti FA-1 = DSM 20564 [AOCD]
9541
9627
+
Ser
GGA
[ENA]
¡û
>W131234714
AUKZ01000012
Bacillota
Streptococcus castoreus DSM 17536 [AUKZ]
16710
16624
-
Ser
GGA
[ENA]
¡û
>C024689
CP000419
Bacillota
Streptococcus thermophilus LMD-9 [CP000419]
1471433
1471347
-
Ser
GGA
[Ensembl]
¡û
>W141008848
AHAA01000003
Bacillota
Streptococcus urinalis FB127-CNA-2 [AHAA]
60368
60454
+
Ser
GGA
[ENA]
¡û
>W141010434
AHRN01000039
Bacillota
Streptococcus mutans 2ST1 [AHRN]
6256
6170
-
Ser
GGA
[ENA]
¡û
>WENV180130643
OATG01000506
[OATG] human gut metagenome; faeces
10945
10859
-
Ser
GGA
[ENA]
¢þ
>W141011250
AHSQ01000017
Bacillota
Streptococcus mutans SF14 [AHSQ]
26369
26455
+
Ser
GGA
[ENA]
¡û
>W141011531
AHTA01000032
Bacillota
Streptococcus mutans 66-2A [AHTA]
6380
6294
-
Ser
GGA
[ENA]
¡û
>WENV180151814
OAUP01000136
[OAUP] human gut metagenome; faeces
25209
25123
-
Ser
GGA
[ENA]
¢þ
>WENV180168243
OAVQ01000109
[OAVQ] human gut metagenome; faeces
20986
20900
-
Ser
GGA
[ENA]
¢þ
>W141017612
AIDX01000001
Bacillota
Streptococcus canis FSL Z3-227 [AIDX]
480264
480178
-
Ser
GGA
[ENA]
¡û
>WENV180232152
OBCO01000148
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
16105
16019
-
Ser
GGA
[ENA]
¢þ
>WENV180407852
OBUR01003448
[OBUR] human gut metagenome; faeces
374
460
+
Ser
GGA
[ENA]
¢þ
>W141039181
ALWR01000005
Bacillota
Streptococcus parauberis KRS-02109 [ALWR]
77916
77830
-
Ser
GGA
[ENA]
¡û
>W141040139
ALYR01000027
Bacillota
Streptococcus mutans B084SM-A [ALYR]
89270
89356
+
Ser
GGA
[ENA]
¡û
>WENV180426153
OBVY01007424
[OBVY] human gut metagenome; faeces
348
262
-
Ser
GGA
[ENA]
¢þ
>W141040790
ALZD01000030
Bacillota
Streptococcus mutans str. B16 P Sm1 [ALZD]
108325
108411
+
Ser
GGA
[ENA]
¡û
>W141040807
ALZD01000038
Bacillota
Streptococcus mutans str. B16 P Sm1 [ALZD]
108400
108486
+
Ser
GGA
[ENA]
¡û
>W141040888
ALZF01000015
Bacillota
Streptococcus mutans B111SM-A [ALZF]
88349
88435
+
Ser
GGA
[ENA]
¡û
>W141040923
ALZF01000030
Bacillota
Streptococcus mutans B111SM-A [ALZF]
88251
88337
+
Ser
GGA
[ENA]
¡û
>WENV180451560
OBXI01022388
[OBXI] human gut metagenome; faeces
76
162
+
Ser
GGA
[ENA]
¢þ
>WENV180801506
ODJD01043490
[ODJD] human metagenome; G_DNA_Supragingival plaque
271
357
+
Ser
GGA
[ENA]
¢þ
>WENV180865224
ODLI01057204
[ODLI] human metagenome; G_DNA_Buccal mucosa
91
177
+
Ser
GGA
[ENA]
¢þ
>WENV180954459
ODUJ01002778
[ODUJ] human metagenome; G_DNA_Tongue dorsum
6832
6918
+
Ser
GGA
[ENA]
¢þ
>WENV181037990
ODXQ01000180
[ODXQ] human metagenome; G_DNA_Tongue dorsum
6629
6715
+
Ser
GGA
[ENA]
¢þ
>WENV181139394
OEGN01007894
[OEGN] human metagenome; G_DNA_Tongue dorsum
876
790
-
Ser
GGA
[ENA]
¢þ
>WENV181359305
OFMX01000038
[OFMX] human gut metagenome; human gut
35638
35552
-
Ser
GGA
[ENA]
¢þ
>WENV181454488
OGED01003571
[OGED] metagenome; Human gut stool
1910
1824
-
Ser
GGA
[ENA]
¢þ
>WENV181458309
OGEJ01006311
[OGEJ] metagenome; Human gut stool
997
911
-
Ser
GGA
[ENA]
¢þ
>WENV181460841
OGEL01076149
[OGEL] metagenome; Human gut stool
428
514
+
Ser
GGA
[ENA]
¢þ
>WENV181492493
OGFY01016922
[OGFY] metagenome; Human gut stool
744
658
-
Ser
GGA
[ENA]
¢þ
>WENV181501137
OGGH01057329
[OGGH] metagenome; Human gut stool
640
554
-
Ser
GGA
[ENA]
¢þ
>WENV181538927
OGHZ01000170
[OGHZ] metagenome; Human gut stool
39759
39673
-
Ser
GGA
[ENA]
¢þ
>WENV181573458
OGJR01009614
[OGJR] metagenome; Human gut stool
89
3
-
Ser
GGA
[ENA]
¢þ
>WENV181933169
OGYS01000805
[OGYS] human gut metagenome; faeces
10420
10334
-
Ser
GGA
[ENA]
¢þ
>WENV181936311
OGYV01000740
[OGYV] human gut metagenome; faeces
11477
11391
-
Ser
GGA
[ENA]
¢þ
>WENV181990887
OHAP01032500
[OHAP] human gut metagenome; faeces
738
824
+
Ser
GGA
[ENA]
¢þ
>WENV182138478
OHKN01009255
[OHKN] human gut metagenome; feces
114
200
+
Ser
GGA
[ENA]
¢þ
>WENV182152498
OHLL01015707
[OHLL] human gut metagenome; feces
304
390
+
Ser
GGA
[ENA]
¢þ
>WENV182264017
OHTU01001071
[OHTU] human gut metagenome; feces
3373
3459
+
Ser
GGA
[ENA]
¢þ
>WENV182352741
OIBK01008975
[OIBK] human gut metagenome; feces
1556
1642
+
Ser
GGA
[ENA]
¢þ
>WENV182383931
OIDU01000080
[OIDU] human gut metagenome; feces
46804
46718
-
Ser
GGA
[ENA]
¢þ
>WENV182596697
OJIZ01005742
[OJIZ] metagenome; faeces
460
546
+
Ser
GGA
[ENA]
¢þ
>WENV182596698
OJIZ01005753
[OJIZ] metagenome; faeces
334
248
-
Ser
GGA
[ENA]
¢þ
>WENV182813590
OJYE01003857
[OJYE] human gut metagenome; human gut
343
429
+
Ser
GGA
[ENA]
¢þ
>WENV182865173
OKQJ01000012
[OKQJ] human gut metagenome; human gut
45069
44983
-
Ser
GGA
[ENA]
¢þ
>WENV183102903
OLNI01010196
[OLNI] human gut metagenome; faeces
1390
1304
-
Ser
GGA
[ENA]
¢þ
>WENV183106543
OLNL01012109
[OLNL] human gut metagenome; faeces
1629
1543
-
Ser
GGA
[ENA]
¢þ
>WENV183106551
OLNL01012186
[OLNL] human gut metagenome; faeces
1609
1523
-
Ser
GGA
[ENA]
¢þ
>WENV183147859
OLON01003626
[OLON] human gut metagenome; faeces
3718
3632
-
Ser
GGA
[ENA]
¢þ
>WENV183165144
OLOX01002559
[OLOX] human gut metagenome; faeces
14786
14872
+
Ser
GGA
[ENA]
¢þ
>WENV183188585
OLPP01003515
[OLPP] human gut metagenome; faeces
1621
1535
-
Ser
GGA
[ENA]
¢þ
>WENV183204989
OLPZ01001593
[OLPZ] human gut metagenome; faeces
6888
6802
-
Ser
GGA
[ENA]
¢þ
>WENV183218827
OLQJ01005599
[OLQJ] human gut metagenome; faeces
444
530
+
Ser
GGA
[ENA]
¢þ
>WENV183261428
OLRP01029268
[OLRP] human gut metagenome; faeces
814
900
+
Ser
GGA
[ENA]
¢þ
>WENV183283641
OLSD01001100
[OLSD] human gut metagenome; faeces
22682
22768
+
Ser
GGA
[ENA]
¢þ
>WENV183517854
OMNP01020880
[OMNP] human gut metagenome; feces
125
39
-
Ser
GGA
[ENA]
¢þ
>WENV183585422
OOCR01027962
[OOCR] human gut metagenome; human gut
135
49
-
Ser
GGA
[ENA]
¢þ
>C181068243
CP022547
Bacillota
Streptococcus thermophilus B59671 [CP022547]
780685
780599
-
Ser
GGA
-
¡û
>C181069652
CP022601
Bacillota
Streptococcus pluranimalium 14A0014 [CP022601]
1744882
1744796
-
Ser
GGA
-
¡û
>C181180442
CP029559
Bacillota
Streptococcus sobrinus NIDR 6715-15 [CP029559]
1866527
1866441
-
Ser
GGA
-
¡û
>C191203659
LR134274
Bacillota
Streptococcus salivarius NCTC8618 [LR134274]
1807066
1806980
-
Ser
GGA
-
¡û
>C191206577
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
311252
311338
+
Ser
GGA
-
¡û
>C191207789
LR134341
Bacillota
Streptococcus pseudoporcinus NCTC13786 [LR134341]
1594565
1594651
+
Ser
GGA
-
¡û
>W1911072768
NMRV01000021
Bacillota
Streptococcus canis G361 [NMRV]
16863
16777
-
Ser
GGA
[ENA]
¡û
>W1911691227
QLQH01000071
Bacillota
Streptococcus iniae QMA0258 [QLQH]
1191
1105
-
Ser
GGA
[ENA]
¡û
>W1911691498
QLQO01000074
Bacillota
Streptococcus iniae QMA0247 [QLQO]
1103
1017
-
Ser
GGA
[ENA]
¡û
>W1810109549
PHHI01000037
Bacillota
Streptococcus thermophilus St-6 [PHHI]
6132
6218
+
Ser
GGA
[ENA]
¡û
>W1510657053
CVXQ01000002
Bacillota
Streptococcus equi subsp. equi EQUI0033 [CVXQ]
31695
31609
-
Ser
GGA
[ENA]
¡û
>W1510658637
CVYY01000001
Bacillota
Streptococcus equi subsp. equi EQUI0228 [CVYY]
69710
69796
+
Ser
GGA
[ENA]
¡û
>W1510659254
CVZM01000001
Bacillota
Streptococcus equi subsp. equi EQUI0067 [CVZM]
69710
69796
+
Ser
GGA
[ENA]
¡û
>W1510659867
CWAB01000001
Bacillota
Streptococcus equi subsp. equi EQUI0055 [CWAB]
32329
32243
-
Ser
GGA
[ENA]
¡û
>W1510660755
CWAU01000001
Bacillota
Streptococcus equi subsp. equi EQUI0096 [CWAU]
69755
69841
+
Ser
GGA
[ENA]
¡û
>W1510660979
CWAZ01000001
Bacillota
Streptococcus equi subsp. equi EQUI0105 [CWAZ]
66880
66794
-
Ser
GGA
[ENA]
¡û
>W1510661332
CWBH01000001
Bacillota
Streptococcus equi subsp. equi EQUI0112 [CWBH]
66881
66795
-
Ser
GGA
[ENA]
¡û
>W1510662408
CWCF01000004
Bacillota
Streptococcus equi subsp. equi EQUI0124 [CWCF]
5240
5154
-
Ser
GGA
[ENA]
¡û
>W1510662925
CWCR01000001
Bacillota
Streptococcus equi subsp. equi EQUI0159 [CWCR]
164316
164402
+
Ser
GGA
[ENA]
¡û
>W1510662969
CWCS01000001
Bacillota
Streptococcus equi subsp. equi EQUI0133 [CWCS]
66796
66710
-
Ser
GGA
[ENA]
¡û
>W1510664697
CWEE01000001
Bacillota
Streptococcus equi subsp. equi EQUI0194 [CWEE]
32482
32396
-
Ser
GGA
[ENA]
¡û
>W1510665050
CWEM01000002
Bacillota
Streptococcus equi subsp. equi EQUI0187 [CWEM]
13876
13790
-
Ser
GGA
[ENA]
¡û
>W1510665884
CWFE01000001
Bacillota
Streptococcus equi subsp. equi EQUI0217 [CWFE]
36219
36133
-
Ser
GGA
[ENA]
¡û
>W1510666113
CWFJ01000001
Bacillota
Streptococcus equi subsp. equi EQUI0013 [CWFJ]
69769
69855
+
Ser
GGA
[ENA]
¡û
>W1510666281
CWFN01000001
Bacillota
Streptococcus equi subsp. equi EQUI0017 [CWFN]
66832
66746
-
Ser
GGA
[ENA]
¡û
>W1510772650
JATI01000011
Bacillota
Streptococcus uberis C5072 [JATI]
14800
14714
-
Ser
GGA
[ENA]
¡û
>W11149483
AEUT02000001
Bacillota
Streptococcus parauberis NCFD 2020 [AEUT]
1169067
1168981
-
Ser
GGA
[ENA]
¡û
>W11149809
AEUZ01000003
Bacillota
Streptococcus urinalis 2285-97 [AEUZ]
3774
3688
-
Ser
GGA
[ENA]
¡û
>W1511644746
LDYC01000006
Bacillota
Streptococcus dysgalactiae subsp. equisimilis WCHSDSE-1 [LDYC]
125
39
-
Ser
GGA
[ENA]
¡û
>W11179174
AGGD01000017
Bacillota
Streptococcus sobrinus TCI-16 [AGGD]
11889
11803
-
Ser
GGA
[ENA]
¡û
>W11180291
AGHP01000185
Bacillota
Streptococcus sobrinus TCI-160 [AGHP]
1756
1842
+
Ser
GGA
[ENA]
¡û
>W11182178
AGKX01000019
Bacillota
Streptococcus mutans TCI-163 [AGKX]
66317
66403
+
Ser
GGA
[ENA]
¡û
>W11182290
AGLA01000018
Bacillota
Streptococcus mutans TCI-170 [AGLA]
66909
66995
+
Ser
GGA
[ENA]
¡û
>W11182472
AGLF01000028
Bacillota
Streptococcus mutans TCI-187 [AGLF]
29238
29324
+
Ser
GGA
[ENA]
¡û
>W11183528
AGMI01000027
Bacillota
Streptococcus mutans TCI-280 [AGMI]
29237
29323
+
Ser
GGA
[ENA]
¡û
>W11183708
AGMN01000028
Bacillota
Streptococcus mutans TCI-30 [AGMN]
16718
16804
+
Ser
GGA
[ENA]
¡û
>W1610926122
LTDS01000015
Bacillota
Streptococcus equi subsp. equi [LTDS]
69692
69778
+
Ser
GGA
[ENA]
¡û
>W1610977797
LVWW01000006
Bacillota
Streptococcus thermophilus [LVWW]
61936
62022
+
Ser
GGA
[ENA]
¡û
>W1611013810
LXZX01000005
Bacillota
Streptococcus vestibularis [LXZX]
1083530
1083616
+
Ser
GGA
[ENA]
¡û
>W1710509965
FMXP01000032
Bacillota
Streptococcus henryi [FMXP]
4754
4840
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK