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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289834 (62 seq.)
>C171100895
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
989408
989333
-
Phe
GAA
-
¡û
>W131222846
AUBP01000006
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
18969
18894
-
Phe
GAA
[ENA]
¡û
>W131222847
AUBP01000006
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
18829
18754
-
Phe
GAA
[ENA]
¡û
>W131224785
AUDB01000002
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
450432
450507
+
Phe
GAA
[ENA]
¡û
>W131224786
AUDB01000002
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
450700
450775
+
Phe
GAA
[ENA]
¡û
>W131224854
AUDC01000010
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
508599
508524
-
Phe
GAA
[ENA]
¡û
>W131224855
AUDC01000010
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
508382
508307
-
Phe
GAA
[ENA]
¡û
>W131224422
AUCU01000008
Thermodesulfobacteriota
Desulfatirhabdium butyrativorans DSM 18734 [AUCU]
67858
67933
+
Phe
GAA
[ENA]
¡û
>w022494
AAWN01000107
Thermodesulfobacteriota
Desulfosudis oleivorans oleovorans Hxd3 [AAWN]
5550
5473
-
Phe
GAA
[ENA]
¡û
>WENV180042601
LQAF01011182
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
270
345
+
Phe
GAA
[ENA]
¢þ
>WENV180043255
LQAH01016473
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
182
257
+
Phe
GAA
[ENA]
¢þ
>WENV180332693
OBLD01102858
[OBLD] metagenome; water
160
235
+
Phe
GAA
[ENA]
¢þ
>WENV180346572
OBLN01160683
[OBLN] sediment metagenome; sediment
83
158
+
Phe
GAA
[ENA]
¢þ
>WENV180581684
OCMK01038437
[OCMK] metagenome; diffuse fluid
144
69
-
Phe
GAA
[ENA]
¢þ
>WENV181207494
OFAZ01001071
[OFAZ] metagenome; hydrothermal vent
182
257
+
Phe
GAA
[ENA]
¢þ
>WENV181207839
OFBA01000781
[OFBA] metagenome; hydrothermal vent
170
245
+
Phe
GAA
[ENA]
¢þ
>WENV181223894
OFDD01002527
[OFDD] metagenome; hydrothermal vent
949
1024
+
Phe
GAA
[ENA]
¢þ
>WENV181231623
OFEK01043341
[OFEK] activated sludge metagenome; Anaerobic digester
615
540
-
Phe
GAA
[ENA]
¢þ
>WENV181529185
OGHL01033340
[OGHL] metagenome; Human gut stool
250
325
+
Phe
GAA
[ENA]
¢þ
>WENV181603919
OGLI01002782
[OGLI] metagenome; Human gut stool
7876
7951
+
Phe
GAA
[ENA]
¢þ
>WENV181637146
OGNB01001466
[OGNB] metagenome; Human gut stool
26
101
+
Phe
GAA
[ENA]
¢þ
>WENV181747156
OGQN01013188
[OGQN] human gut metagenome; faeces
2046
1971
-
Phe
GAA
[ENA]
¢þ
>WENV182274104
OHUJ01037094
[OHUJ] human gut metagenome; feces
523
448
-
Phe
GAA
[ENA]
¢þ
>C08004128
CP000859
Thermodesulfobacteriota
Desulfosudis oleivorans Hxd3 [CP000859]
2083463
2083538
+
Phe
GAA
[Ensembl]
¡û
>WENV182616759
OJKC01057796
[OJKC] metagenome; faeces
324
399
+
Phe
GAA
[ENA]
¢þ
>W141278233
JAFE01000004
Thermodesulfobacteriota
Desulfonatronum lacustre DSM 10312 [JAFE]
578949
578874
-
Phe
GAA
[ENA]
¡û
>W141279167
JAGC01000009
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
205272
205347
+
Phe
GAA
[ENA]
¡û
>WENV182892188
OKSH01028240
[OKSH] human gut metagenome; faeces
466
391
-
Phe
GAA
[ENA]
¢þ
>WENV183512174
OMKS01000095
[OMKS] sediment metagenome; hot spring sediment
69612
69687
+
Phe
GAA
[ENA]
¢þ
>WENV183604429
OODL01005207
[OODL] human gut metagenome; human gut
4859
4934
+
Phe
GAA
[ENA]
¢þ
>WENV183706046
PDWI01002978
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19536
19461
-
Phe
GAA
[ENA]
¢þ
>WENV183708966
PDWI01021902
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2848
2773
-
Phe
GAA
[ENA]
¢þ
>WENV183721987
PDWJ01098271
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
583
508
-
Phe
GAA
[ENA]
¢þ
>WENV183747594
PPCM01007132
[PPCM] marine sediment metagenome; marine sediment
1106
1031
-
Phe
GAA
[ENA]
¢þ
>WENV183747663
PPCM01014887
[PPCM] marine sediment metagenome; marine sediment
934
1009
+
Phe
GAA
[ENA]
¢þ
>WENV183775801
PPYF01071461
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3520
3595
+
Phe
GAA
[ENA]
¢þ
>WENV183787078
PPYF01312039
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3849
3774
-
Phe
GAA
[ENA]
¢þ
>WENV183788890
PPYF01370954
[PPYF] human gut metagenome; stool from patient with Crohn's disease
6380
6305
-
Phe
GAA
[ENA]
¢þ
>ENV08002557
ABPX01004499
microbial mat metagenome; Guerrero Negro Hypersaline Mat 09; altitude 310m AMSL; sample depth 1m below water level, 22-34mm depth into the mat
479
404
-
Phe
GAA
[ENA]
¡û
>WENV170560978
CZCA01001724
[CZCA] anaerobic digester metagenome; anaerobic digester
2037
1962
-
Phe
GAA
[ENA]
¢þ
>WENV170645366
JMSV01000898
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
2
77
+
Phe
GAA
[ENA]
¢þ
>W141564021
JIAK01000020
Thermodesulfobacteriota
Desulfovermiculus halophilus DSM 18834 [JIAK]
11478
11553
+
Phe
GAA
[ENA]
¡û
>W141565671
JIBV01001360
Thermodesulfobacteriota
Desulfobacula sp. TS [JIBV]
659
733
+
Phe
GAA
[ENA]
¡û
>W141565680
JIBV01002070
Thermodesulfobacteriota
Desulfobacula sp. TS [JIBV]
6181
6256
+
Phe
GAA
[ENA]
¡û
>W09117972
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
461651
461726
+
Phe
GAA
[ENA]
¡û
>W09117980
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
464353
464278
-
Phe
GAA
[ENA]
¡û
>W141731332
JNJA01000002
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
60126
60201
+
Phe
GAA
[ENA]
¡û
>W141804607
JPIK01000023
Thermodesulfobacteriota
Desulfonatronum thiodismutans [JPIK]
79282
79357
+
Phe
GAA
[ENA]
¡û
>C141011899
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1121231
1121306
+
Phe
GAA
-
¡û
>C141011900
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1121499
1121574
+
Phe
GAA
-
¡û
>C09104239
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
4196943
4197018
+
Phe
GAA
[Ensembl]
¡û
>C09104240
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
4199645
4199570
-
Phe
GAA
[Ensembl]
¡û
>W1810338702
PUTT01000013
Thermodesulfobacteriota
Desulfobacteraceae bacterium SEEP-SAG9 [PUTT]
17766
17841
+
Phe
GAA
[ENA]
¡û
>W1810445551
PZKN01000008
Thermodesulfobacteriota
Desulfonatronum sp. SC1 [PZKN]
32633
32558
-
Phe
GAA
[ENA]
¡û
>W1511534044
JYNO01000001
Thermodesulfobacteriota
Desulfonatronum thioautotrophicum ASO4-1 [JYNO]
1067387
1067462
+
Phe
GAA
[ENA]
¡û
>W1511534089
JYNP01000009
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
11858
11783
-
Phe
GAA
[ENA]
¡û
>W1610046085
BBCC01000002
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
100802
100875
+
Phe
GAA
[ENA]
¡û
>W121036492
AHMC01000022
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
155788
155713
-
Phe
GAA
[ENA]
¡û
>C131018081
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1121231
1121306
+
Phe
GAA
[Ensembl]
¡û
>C131018082
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1121499
1121574
+
Phe
GAA
[Ensembl]
¡û
>W1710042881
BBCC01000002
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
100802
100875
+
Phe
GAA
[ENA]
¡û
>W1710509937
FMXO01000021
Thermodesulfobacteriota
Desulfonatronum thiosulfatophilum [FMXO]
61617
61692
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK