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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291618 (82 seq.)
>W1710815794
LKKO01000018
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
90011
90086
+
Met
CAT
[ENA]
¡û
>W1710872772
LMMG01000005
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
84511
84436
-
Met
CAT
[ENA]
¡û
>W1710873230
LMMQ01000015
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
109306
109381
+
Met
CAT
[ENA]
¡û
>W1710873379
LMMS01000030
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
67376
67451
+
Met
CAT
[ENA]
¡û
>W1710873911
LMNE01000002
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
118031
118106
+
Met
CAT
[ENA]
¡û
>W1710874029
LMNG01000030
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
408291
408366
+
Met
CAT
[ENA]
¡û
>W1710874263
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
801978
802053
+
Met
CAT
[ENA]
¡û
>W1710874468
LMNQ01000004
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
123821
123896
+
Met
CAT
[ENA]
¡û
>W1710874645
LMNU01000006
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
26017
25942
-
Met
CAT
[ENA]
¡û
>W1711129617
LUUB01000086
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
29792
29867
+
Met
CAT
[ENA]
¡û
>W1711504237
MKUJ01000003
Alphaproteobacteria
Afipia sp. 64-13 [MKUJ]
12251
12326
+
Met
CAT
[ENA]
¡û
>W1711505927
MKVY01000038
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
525135
525060
-
Met
CAT
[ENA]
¡û
>WENV180032081
FTJU01070054
[FTJU] metagenome; soil
7
82
+
Ile2
CAT
[ENA]
¡û
>WENV180292187
OBIV01342065
[OBIV] soil metagenome; Clay
233
308
+
Ile2
CAT
[ENA]
¡û
>W141223342
BADE01000037
Alphaproteobacteria
Methylobacterium sp. B34 [BADE]
9330
9405
+
Met
CAT
[ENA]
¡û
>WENV183745191
PJUL01004965
[PJUL] feces metagenome; Chicken feces enriched on filter paper
1596
1521
-
Ile2
CAT
[ENA]
¡û
>WENV170565705
FKKE01000045
[FKKE] freshwater metagenome; freshwater
4555
4480
-
Met
CAT
[ENA]
¡û
>WENV170623462
FUWD013152291
[FUWD] metagenome; unknown
957
1032
+
Met
CAT
[ENA]
¡û
>WENV170631727
FUWD013363212
[FUWD] metagenome; unknown
957
1032
+
Met
CAT
[ENA]
¡û
>WENV170706107
LNAP01001139
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
722
797
+
Met
CAT
[ENA]
¡û
>WENV170709178
LNFM01000160
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
75177
75102
-
Met
CAT
[ENA]
¡û
>WENV170709761
LNFM01000671
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2854
2929
+
Met
CAT
[ENA]
¡û
>WENV170710277
LNFM01001434
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
29793
29868
+
Met
CAT
[ENA]
¡û
>WENV170712196
LNFM01010705
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3128
3053
-
Met
CAT
[ENA]
¡û
>WENV170712260
LNFM01011500
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11986
11911
-
Met
CAT
[ENA]
¡û
>WENV170713973
LNFM01048912
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2932
2857
-
Met
CAT
[ENA]
¡û
>C181227835
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
1834448
1834523
+
Met
CAT
-
¡û
>W09107615
ABJR01000012
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
39661
39736
+
Met
CAT
[ENA]
¡û
>W1910548978
FZOX01000007
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
190947
191022
+
Met
CAT
[ENA]
¡û
>C09107525
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
4455306
4455231
-
Met
CAT
[Ensembl]
¡û
>C09107626
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
3955975
3955900
-
Met
CAT
[Ensembl]
¡û
>W1911809165
QYYC01000029
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
39833
39758
-
Met
CAT
[ENA]
¡û
>W1810079863
PELK01000480
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
665
740
+
Met
CAT
[ENA]
¡û
>W1810368608
PVZS01000026
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
68060
67985
-
Met
CAT
[ENA]
¡û
>W1810487024
QAYG01000017
Alphaproteobacteria
Breoghania corrubedonensis DSM 23382 [QAYG]
36236
36311
+
Met
CAT
[ENA]
¡û
>W1810573761
QEKZ01000005
Alphaproteobacteria
Methylobacterium organophilum DSM 760 [QEKZ]
7081
7008
-
Met
CAT
[ENA]
¡û
>W1810672331
QJTI01000035
Alphaproteobacteria
Rhodopseudomonas faecalis JCM 11668 [QJTI]
16875
16950
+
Met
CAT
[ENA]
¡û
>SRA1014152
SRR023845.20643
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
252
177
-
Met
CAT
[SRA]
>SRA1014356
SRR023845.100544
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
272
197
-
Met
CAT
[SRA]
>SRA1014464
SRR023845.151084
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
243
168
-
Met
CAT
[SRA]
>SRA1015193
SRR023845.495130
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
117
42
-
Met
CAT
[SRA]
>SRA1015233
SRR023845.511108
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
67
142
+
Met
CAT
[SRA]
>W2010169342
CABFVH010000029
Alphaproteobacteria
Methylobacterium dankookense SW08-7 [CABFVH]
51144
51219
+
Ile2
CAT
[ENA]
¡û
>W2010324523
CACTHX010000003
Alphaproteobacteria
Methylobacterium brachiatum [CACTHX]
781694
781619
-
Ile2
CAT
[ENA]
¡û
>SRA1034335
SRR035089.60425
454 Sequencing (SRP001810)
86
161
+
Met
CAT
[SRA]
>W2010472598
JAAHTB010000056
Alphaproteobacteria
Methylobacterium sp. BTF04 [JAAHTB]
2782
2707
-
Ile2
CAT
[ENA]
¡û
>W2010493374
JAAKGV010000001
Alphaproteobacteria
Methylobacterium sp. DB0501 [JAAKGV]
633073
632998
-
Ile2
CAT
[ENA]
¡û
>W2010672767
JACCCR010000002
Alphaproteobacteria
Methylobacterium sp. YL-MPn5-2016 [JACCCR]
715777
715702
-
Ile2
CAT
[ENA]
¡û
>W2010678119
JACDIS010000017
Alphaproteobacteria
Chthonobacter sp. yh7-1 [JACDIS]
53305
53230
-
Ile2
CAT
[ENA]
¡û
>W2010703758
JACHIJ010000007
Alphaproteobacteria
Afipia massiliensis DSM 17498 [JACHIJ]
290188
290263
+
Ile2
CAT
[ENA]
¡û
>W2011506129
RYFI01000004
Alphaproteobacteria
Hansschlegelia zhihuaiae S 113 [RYFI]
235170
235245
+
Ile2
CAT
[ENA]
¡û
>W2011980767
VDDA01000003
Alphaproteobacteria
Methylobacterium sp. 17Sr1-39 [VDDA]
536534
536459
-
Ile2
CAT
[ENA]
¡û
>W2012127238
VRVG01000222
Alphaproteobacteria
Methylobacterium sp. WL7 [VRVG]
2000
2075
+
Met
CAT
[ENA]
¡û
>W2110278967
JACWCW010000015
Alphaproteobacteria
Methylorubrum rhodesianum I1-R3 [JACWCW]
1241
1166
-
Ile2
CAT
[ENA]
¡û
>W2110554800
JAGIPA010000007
Alphaproteobacteria
Methylobacterium sp. PvP105 [JAGIPA]
153
78
-
Ile2
CAT
[ENA]
¡û
>W2110590326
JAHBGC010000020
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [JAHBGC]
115270
115195
-
Ile2
CAT
[ENA]
¡û
>C231248598
CP088008
Alphaproteobacteria
Tardiphaga sp. 37S4 [CP088008]
3652694
3652769
+
Ile2
CAT
-
¡û
>C231272898
CP090349
Alphaproteobacteria
Methylobacterium oryzae H33R-06 [CP090349]
3620181
3620256
+
Ile2
CAT
-
¡û
>C231307450
CP091851
Alphaproteobacteria
Hyphomicrobiales bacterium 7MK25 [CP091851]
3038590
3038515
-
Ile2
CAT
-
¡û
>W2310013384
BPQR01000015
Alphaproteobacteria
Methylobacterium jeotgali LMG 23639 [BPQR]
30778
30703
-
Ile2
CAT
[ENA]
¡û
>W2310013438
BPQS01000008
Alphaproteobacteria
Methylobacterium longum DSM 23933 [BPQS]
214127
214052
-
Ile2
CAT
[ENA]
¡û
>W2310013556
BPQU01000063
Alphaproteobacteria
Methylobacterium mesophilicum NBRC 15688 [BPQU]
11296
11371
+
Met
CAT
[ENA]
¡û
>W2310022823
BSFJ01000005
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [BSFJ]
115270
115195
-
Ile2
CAT
[ENA]
¡û
>C10110746
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
1968413
1968488
+
Met
CAT
[Ensembl]
¡û
>W1511563291
LABY01000034
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
18534
18609
+
Met
CAT
[ENA]
¡û
>W121065418
AJPZ01000570
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
827
902
+
Met
CAT
[ENA]
¡û
>W1610735050
LMME01000018
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
9960
9885
-
Met
CAT
[ENA]
¡û
>W1610735345
LMML01000010
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
11438
11363
-
Met
CAT
[ENA]
¡û
>W1610736039
LMMZ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
443946
443871
-
Met
CAT
[ENA]
¡û
>W1610736935
LMNS01000038
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
505678
505603
-
Met
CAT
[ENA]
¡û
>W1610739596
LMPY01000010
Alphaproteobacteria
Methylobacterium sp. Leaf361 [LMPY]
51186
51261
+
Met
CAT
[ENA]
¡û
>W1610741559
LMRM01000056
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
94825
94750
-
Met
CAT
[ENA]
¡û
>W1610907977
LSEF01000081
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
66632
66707
+
Met
CAT
[ENA]
¡û
>W1610912684
LSIM01000148
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
31121
31196
+
Met
CAT
[ENA]
¡û
>W1610913070
LSIX01000337
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
2226
2151
-
Met
CAT
[ENA]
¡û
>W1610917587
LSNC01000042
Alphaproteobacteria
Methylorubrum populi [LSNC]
8531
8456
-
Met
CAT
[ENA]
¡û
>W1610940690
LUUB01000086
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
29792
29867
+
Met
CAT
[ENA]
¡û
>W1610978999
LVYV01000053
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
50026
50101
+
Met
CAT
[ENA]
¡û
>W1710559260
FOMM01000026
Alphaproteobacteria
Methylobacterium sp. 13MFTsu3.1M2 [FOMM]
99927
100002
+
Met
CAT
[ENA]
¡û
>W1710567574
FOSV01000050
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
1827
1752
-
Met
CAT
[ENA]
¡û
>W1710709707
LDRL01000031
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
35063
34988
-
Met
CAT
[ENA]
¡û
>W1710709827
LDRN01000031
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
37364
37439
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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