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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292414 (108 seq.)
>W131238084
AUUB01000008
Bacillota
Terrisporobacter glycolicus ATCC 14880 = DSM 1288 [AUUB]
7
82
+
Lys
TTT
[ENA]
¡û
>W131238099
AUUB01000014
Bacillota
Terrisporobacter glycolicus ATCC 14880 = DSM 1288 [AUUB]
84
159
+
Lys
TTT
[ENA]
¡û
>W131238109
AUUB01000019
Bacillota
Terrisporobacter glycolicus ATCC 14880 = DSM 1288 [AUUB]
25760
25685
-
Lys
TTT
[ENA]
¡û
>WENV180098013
MTBK01223258
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
496
421
-
Lys
TTT
[ENA]
¡û
>WENV180130448
OATG01000196
[OATG] human gut metagenome; faeces
68999
68924
-
Lys
TTT
[ENA]
¡û
>WENV180150138
OAUM01029067
[OAUM] human gut metagenome; faeces
107
32
-
Lys
TTT
[ENA]
¡û
>WENV180162490
OAVG01014175
[OAVG] human gut metagenome; faeces
584
509
-
Lys
TTT
[ENA]
¡û
>WENV180167447
OAVO01057221
[OAVO] human gut metagenome; faeces
211
136
-
Lys
TTT
[ENA]
¡û
>WENV180183383
OAWP01025992
[OAWP] human gut metagenome; faeces
43
118
+
Lys
TTT
[ENA]
¡û
>WENV180234491
OBCQ01127885
[OBCQ] human gut metagenome; human gut
26
101
+
Lys
TTT
[ENA]
¡û
>WENV180279474
OBHX01041346
[OBHX] metagenome; feces
66
141
+
Lys
TTT
[ENA]
¡û
>WENV180316507
OBKI01035595
[OBKI] human gut metagenome; human gut
485
410
-
Lys
TTT
[ENA]
¡û
>WENV180349824
OBLO01133693
[OBLO] metagenome; feces
71
146
+
Lys
TTT
[ENA]
¡û
>WENV180431363
OBWG01025831
[OBWG] human gut metagenome; faeces
298
223
-
Lys
TTT
[ENA]
¡û
>WENV180435276
OBWL01020686
[OBWL] human gut metagenome; faeces
72
-1
-
Lys
TTT
[ENA]
¡û
>WENV180444422
OBWZ01008506
[OBWZ] human gut metagenome; faeces
320
245
-
Lys
TTT
[ENA]
¡û
>WENV180444486
OBWZ01017898
[OBWZ] human gut metagenome; faeces
172
97
-
Lys
TTT
[ENA]
¡û
>WENV180445787
OBXA01025882
[OBXA] human gut metagenome; faeces
866
791
-
Lys
TTT
[ENA]
¡û
>WENV180447241
OBXC01029244
[OBXC] human gut metagenome; faeces
522
597
+
Lys
TTT
[ENA]
¡û
>WENV180461210
OBXZ01027683
[OBXZ] human gut metagenome; faeces
329
404
+
Lys
TTT
[ENA]
¡û
>WENV180465805
OBYF01030802
[OBYF] human gut metagenome; faeces
128
203
+
Lys
TTT
[ENA]
¡û
>WENV180467094
OBYG01085884
[OBYG] human gut metagenome; faeces
110
35
-
Lys
TTT
[ENA]
¡û
>WENV180477876
OBYZ01029054
[OBYZ] human gut metagenome; faeces
233
308
+
Lys
TTT
[ENA]
¡û
>WENV180501940
OCAK01023336
[OCAK] human gut metagenome; faeces
172
97
-
Lys
TTT
[ENA]
¡û
>WENV180508336
OCAT01107188
[OCAT] human gut metagenome; faeces
67
141
+
Lys
TTT
[ENA]
¡û
>WENV180513330
OCHA01024197
[OCHA] human gut metagenome; human gut
532
607
+
Lys
TTT
[ENA]
¡û
>WENV180529752
OCHK01000236
[OCHK] human gut metagenome; human gut
63837
63762
-
Lys
TTT
[ENA]
¡û
>WENV180540255
OCHQ01011617
[OCHQ] human gut metagenome; human gut
67
142
+
Lys
TTT
[ENA]
¡û
>WENV180540425
OCHQ01037889
[OCHQ] human gut metagenome; human gut
67
142
+
Lys
TTT
[ENA]
¡û
>WENV180616443
OCQA01000166
[OCQA] human gut metagenome; human gut
26392
26317
-
Lys
TTT
[ENA]
¡û
>WENV180651126
OCSZ01068698
[OCSZ] human gut metagenome; human gut
313
238
-
Lys
TTT
[ENA]
¡û
>WENV180651788
OCSZ01370580
[OCSZ] human gut metagenome; human gut
75
1
-
Lys
TTT
[ENA]
¡û
>WENV180671709
OCVV011320310
[OCVV] gut metagenome; gut
5405
5480
+
Lys
TTT
[ENA]
¡û
>WENV180671713
OCVV011320310
[OCVV] gut metagenome; gut
5405
5480
+
Lys
TTT
[ENA]
¡û
>WENV180674758
OCVV011354188
[OCVV] gut metagenome; gut
2473
2398
-
Lys
TTT
[ENA]
¡û
>WENV180674771
OCVV011354188
[OCVV] gut metagenome; gut
2473
2398
-
Lys
TTT
[ENA]
¡û
>WENV181218125
OFCL01010753
[OFCL] metagenome; Human gut stool
357
432
+
Lys
TTT
[ENA]
¡û
>WENV181469191
OGET01000005
[OGET] metagenome; Human gut stool
78955
79030
+
Lys
TTT
[ENA]
¡û
>WENV181495259
OGGC01000154
[OGGC] metagenome; Human gut stool
86
161
+
Lys
TTT
[ENA]
¡û
>WENV181506491
OGGM01005323
[OGGM] metagenome; Human gut stool
151
226
+
Lys
TTT
[ENA]
¡û
>WENV181507399
OGGO01005035
[OGGO] metagenome; Human gut stool
19
94
+
Lys
TTT
[ENA]
¡û
>WENV181709742
OGPN01003493
[OGPN] human gut metagenome; faeces
7558
7483
-
Lys
TTT
[ENA]
¡û
>WENV181745117
OGQM01009338
[OGQM] human gut metagenome; faeces
3637
3562
-
Lys
TTT
[ENA]
¡û
>WENV181774322
OGRE01011821
[OGRE] human gut metagenome; faeces
2500
2574
+
Lys
TTT
[ENA]
¡û
>WENV181793376
OGRR01001860
[OGRR] human gut metagenome; faeces
12281
12206
-
Lys
TTT
[ENA]
¡û
>WENV182307056
OHXD01023189
[OHXD] human gut metagenome; feces
508
582
+
Lys
TTT
[ENA]
¡û
>WENV182390432
OIEE01000951
[OIEE] human gut metagenome; human gut
8519
8444
-
Lys
TTT
[ENA]
¡û
>WENV182393129
OIEH01006140
[OIEH] human gut metagenome; human gut
2029
2104
+
Lys
TTT
[ENA]
¡û
>WENV182428139
OIHY01009787
[OIHY] human gut metagenome; human gut
764
839
+
Lys
TTT
[ENA]
¡û
>WENV182466387
OIOP01004172
[OIOP] human gut metagenome; human gut
206
281
+
Lys
TTT
[ENA]
¡û
>WENV182539550
OIXV01007010
[OIXV] human gut metagenome; faeces
2851
2776
-
Lys
TTT
[ENA]
¡û
>WENV182629155
OJKR01011791
[OJKR] metagenome; surface
758
833
+
Lys
TTT
[ENA]
¡û
>WENV182647500
OJME01003740
[OJME] human gut metagenome; feces
8293
8218
-
Lys
TTT
[ENA]
¡û
>WENV182695767
OJOJ01030176
[OJOJ] human gut metagenome; human gut
808
733
-
Lys
TTT
[ENA]
¡û
>WENV182960882
OKWK01000038
[OKWK] human gut metagenome; stool
123753
123828
+
Lys
TTT
[ENA]
¡û
>WENV183032109
OLFX01063859
[OLFX] human gut metagenome; faeces
297
222
-
Lys
TTT
[ENA]
¡û
>WENV183068302
OLIQ01005104
[OLIQ] metagenome; faeces
956
1031
+
Lys
TTT
[ENA]
¡û
>WENV183079448
OLIX01027287
[OLIX] human gut metagenome; feces
1182
1107
-
Lys
TTT
[ENA]
¡û
>WENV183103590
OLNJ01001466
[OLNJ] human gut metagenome; faeces
12089
12014
-
Lys
TTT
[ENA]
¡û
>WENV183107751
OLNM01012718
[OLNM] human gut metagenome; faeces
2733
2658
-
Lys
TTT
[ENA]
¡û
>WENV183121091
OLNU01059680
[OLNU] human gut metagenome; faeces
504
578
+
Lys
TTT
[ENA]
¡û
>WENV183129950
OLOA01000464
[OLOA] human gut metagenome; faeces
9470
9545
+
Lys
TTT
[ENA]
¡û
>WENV183138633
OLOH01010018
[OLOH] human gut metagenome; faeces
75
1
-
Lys
TTT
[ENA]
¡û
>WENV183140635
OLOJ01000049
[OLOJ] human gut metagenome; faeces
44608
44683
+
Lys
TTT
[ENA]
¡û
>WENV183156598
OLOS01015049
[OLOS] human gut metagenome; faeces
2041
1966
-
Lys
TTT
[ENA]
¡û
>WENV183173346
OLPD01002404
[OLPD] human gut metagenome; faeces
490
565
+
Lys
TTT
[ENA]
¡û
>WENV183175321
OLPF01000157
[OLPF] human gut metagenome; faeces
35295
35370
+
Lys
TTT
[ENA]
¡û
>WENV183187062
OLPO01005585
[OLPO] human gut metagenome; faeces
5499
5424
-
Lys
TTT
[ENA]
¡û
>WENV183203394
OLPY01000869
[OLPY] human gut metagenome; faeces
20913
20838
-
Lys
TTT
[ENA]
¡û
>WENV183253695
OLRJ01000119
[OLRJ] human gut metagenome; faeces
42784
42709
-
Lys
TTT
[ENA]
¡û
>WENV183261005
OLRP01005797
[OLRP] human gut metagenome; faeces
5723
5648
-
Lys
TTT
[ENA]
¡û
>WENV183296336
OLSL01032405
[OLSL] human gut metagenome; faeces
591
666
+
Lys
TTT
[ENA]
¡û
>WENV183306777
OLTB01000981
[OLTB] human gut metagenome; faeces
417
492
+
Lys
TTT
[ENA]
¡û
>WENV183348256
OLWU01013639
[OLWU] human gut metagenome; feces
210
285
+
Lys
TTT
[ENA]
¡û
>WENV183519717
OMNT01001785
[OMNT] human gut metagenome; faeces
18491
18416
-
Lys
TTT
[ENA]
¡û
>WENV183537005
OOAG01028066
[OOAG] human gut metagenome; human gut
265
340
+
Lys
TTT
[ENA]
¡û
>WENV183578305
OOCL01000329
[OOCL] human gut metagenome; human gut
3071
2996
-
Lys
TTT
[ENA]
¡û
>WENV183588864
OOCV01016429
[OOCV] human gut metagenome; human gut
341
416
+
Lys
TTT
[ENA]
¡û
>WENV183754756
PPYE01102490
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
327
402
+
Lys
TTT
[ENA]
¡û
>WENV170019221
BBPD01006342
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
18416
18491
+
Lys
TTT
[ENA]
¡û
>WENV170020222
BBPE01004355
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
6147
6222
+
Lys
TTT
[ENA]
¡û
>WENV170021440
BBPF01010768
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1259
1334
+
Lys
TTT
[ENA]
¡û
>WENV170022050
BBPG01011486
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
336
261
-
Lys
TTT
[ENA]
¡û
>WENV170686963
LFRM01171002
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
362
437
+
Lys
TTT
[ENA]
¡û
>WENV170999928
NFYY01005730
[NFYY] gut metagenome; feces
8606
8531
-
Lys
TTT
[ENA]
¡û
>W1910229080
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
117310
117385
+
Lys
TTT
[ENA]
¡û
>W2010250089
CABIXZ020000006
Bacillota
Intestinibacter bartlettii [CABIXZ]
88295
88220
-
Lys
TTT
[ENA]
¡û
>W2010250106
CABIXZ020000013
Bacillota
Intestinibacter bartlettii [CABIXZ]
866
791
-
Lys
TTT
[ENA]
¡û
>W2010250117
CABIXZ020000014
Bacillota
Intestinibacter bartlettii [CABIXZ]
1311
1236
-
Lys
TTT
[ENA]
¡û
>W2010250124
CABIXZ020000014
Bacillota
Intestinibacter bartlettii [CABIXZ]
699
624
-
Lys
TTT
[ENA]
¡û
>W2010383056
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
117310
117385
+
Lys
TTT
[ENA]
¡û
>W2012155422
VUNA01000014
Bacillota
Clostridiales Family XIII bacterium WCA-MUC-591-APC-4B [VUNA]
20586
20661
+
Lys
TTT
[ENA]
¡û
>W2110302767
JADCKA010000001
Bacillota
Gallibacter intestinalis DSM 108706 [JADCKA]
267623
267698
+
Lys
TTT
[ENA]
¡û
>W2110718535
JAJBMC010000014
Bacillota
Intestinibacter bartlettii MSK.17.26 [JAJBMC]
496
571
+
Lys
TTT
[ENA]
¡û
>W2110718564
JAJBMC010000055
Bacillota
Intestinibacter bartlettii MSK.17.26 [JAJBMC]
172
97
-
Lys
TTT
[ENA]
¡û
>C231169736
CP081135
Bacillota
Terrisporobacter hibernicus MCA3 [CP081135]
1990895
1990970
+
Lys
TTT
-
¡û
>C231169760
CP081135
Bacillota
Terrisporobacter hibernicus MCA3 [CP081135]
2113980
2114055
+
Lys
TTT
-
¡û
>C231169781
CP081135
Bacillota
Terrisporobacter hibernicus MCA3 [CP081135]
1850035
1849960
-
Lys
TTT
-
¡û
>C231169788
CP081135
Bacillota
Terrisporobacter hibernicus MCA3 [CP081135]
1849402
1849327
-
Lys
TTT
-
¡û
>C231169807
CP081135
Bacillota
Terrisporobacter hibernicus MCA3 [CP081135]
1847602
1847527
-
Lys
TTT
-
¡û
>W1511478925
JWHR01000049
Bacillota
Terrisporobacter othiniensis 08-306576 [JWHR]
684
759
+
Lys
TTT
[ENA]
¡û
>W1511478949
JWHR01000111
Bacillota
Terrisporobacter othiniensis 08-306576 [JWHR]
57291
57216
-
Lys
TTT
[ENA]
¡û
>W1511478956
JWHR01000111
Bacillota
Terrisporobacter othiniensis 08-306576 [JWHR]
56629
56554
-
Lys
TTT
[ENA]
¡û
>W1511478962
JWHR01000116
Bacillota
Terrisporobacter othiniensis 08-306576 [JWHR]
12675
12600
-
Lys
TTT
[ENA]
¡û
>W1710560473
FONK01000008
Bacillota
Peptostreptococcaceae bacterium pGA-8 [FONK]
18894
18969
+
Lys
TTT
[ENA]
¡û
>W1710566314
FORW01000003
Bacillota
Terrisporobacter glycolicus [FORW]
286548
286473
-
Lys
TTT
[ENA]
¡û
>W1710566324
FORW01000008
Bacillota
Terrisporobacter glycolicus [FORW]
25780
25705
-
Lys
TTT
[ENA]
¡û
>W1710601941
FUXV01000008
Bacillota
Intestinibacter bartlettii DSM 16795 [FUXV]
271
346
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK